Browse Element(s) Details


OsAffx.6455.1.S1_at

Description tigr:9637.m02728
TID=OsAffx.6455.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=LBP BPI CETP family, C-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3047411/11LBP/BPI/CETP family, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30446OsAffx.17968.1.S1_at11/119+18542825..18547989Sodium/hydrogen exchanger family protein
LOC_Os09g30454Os.53728.1.S1_at11/119+18549670..18552850wall-associated kinase-like 1, putative, expressed
LOC_Os09g30458OsAffx.30101.1.S1_s_at11/119+18557470..18562756Subtilisin N-terminal Region family protein, expressed
LOC_Os09g30462OsAffx.6454.1.S1_at11/119+18563937..18564736expressed protein
LOC_Os09g30466Os.13862.1.S1_at10/119+18565011..18568120RNase Z, putative, expressed
LOC_Os09g30474OsAffx.6455.1.S1_at11/119+18568420..18572820LBP/BPI/CETP family, C-terminal domain containing protein, expressed
LOC_Os09g30478Os.17123.1.S1_at11/119+18575971..18580276expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6455.1.S1_at--996--3651Chr09:18569350..18569370 (21 bp)
CTTCATACCTTCATAGTTCAGAGTG
LOC_Os09g30474
OsAffx.6455.1.S1_at--413--6751Chr09:18568978..18568999 (22 bp)
GTTCAGAGTGTGATGCAGATCTTGT
LOC_Os09g30474
OsAffx.6455.1.S1_at--207--2271Chr09:18568950..18568974 (25 bp)
AAAAATTGTTTGTGCCCTATGTGAA
LOC_Os09g30474
OsAffx.6455.1.S1_at--845--7291Chr09:18568939..18568963 (25 bp)
GTGCCCTATGTGAATTCATATCTCA
LOC_Os09g30474
OsAffx.6455.1.S1_at--71--231Chr09:18568922..18568946 (25 bp)
ATATCTCAAAAGAGGCTTCCCATTG
LOC_Os09g30474
OsAffx.6455.1.S1_at--1007--4911Chr09:18568908..18568932 (25 bp)
GCTTCCCATTGCCTATCATCAAGGG
LOC_Os09g30474
OsAffx.6455.1.S1_at--928--7671Chr09:18568885..18568909 (25 bp)
GGGTTCTCCATCAGCGATGCATACA
LOC_Os09g30474
OsAffx.6455.1.S1_at--1015--391Chr09:18568876..18568900 (25 bp)
ATCAGCGATGCATACATCCTCACTT
LOC_Os09g30474
OsAffx.6455.1.S1_at--196--571Chr09:18568861..18568885 (25 bp)
ATCCTCACTTCCCAGTCAAGAATAA
LOC_Os09g30474
OsAffx.6455.1.S1_at--308--10011Chr09:18568832..18568856 (25 bp)
TAGCTCTGATGTTGCCTTCATCGGA
LOC_Os09g30474
OsAffx.6455.1.S1_at--190--9071Chr09:18568450..18568474 (25 bp)
TGCTGAATTTGCTGTATTTAACCAT
LOC_Os09g30474
Target Sequence 
CTTCATACCTTCATAGTTCAGAGTGTGATGCAGATCTTGTTGAAAAAATTGTTTGTGCCCTATGTGAATTCATATCTCAA
AAGAGGCTTCCCATTGCCTATCATCAAGGGGTTCTCCATCAGCGATGCATACATCCTCACTTCCCAGTCAAGAATAATTG
TTAGCTCTGATGTTGCCTTCATCGGAGGTCATACTCCCTATTTAAGCCAATGAAAGCATCTGGCAAGAAGTAGGCTTGTT
GCTCAATCAGCAAAGCATCAGAAATCGCCATGTCCCATGGAACGTGTAGTGCTACTTCCTCAACATGTTAGCATTATTTC
GTTCTGCTGTATAATGTTCTTTTGTAAATAACCGTAGGAGTTGTACATATGTAAATCTAGGAACCATAGAACTGTAGAAA
TAGGCTGCTGCTATACTGGAGAAATGGTGGGTTGGTTGTGATGTACCCACAATTCTTCCAAATGAACTGGCAATATACTT
GTACACGTTCTGTCAAAAAAAAAAATGTACACTCCACTGTATAGTGTTCAGTTCTGTAATCTATGCTGAATTTGCTGTAT
TTAACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis