Browse Element(s) Details


OsAffx.6462.1.S1_at

Description tigr:9637.m02772
TID=OsAffx.6462.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3129011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31230Os.8446.1.S1_at10/119+18781976..18787014expressed protein
LOC_Os09g31240NANA9+18788586..18790289retrotransposon protein, putative, unclassified
LOC_Os09g31250Os.2500.1.S1_at1/119+18790869..18793691transposon protein, putative, unclassified
LOC_Os09g31260Os.5953.1.S1_s_at11/119+18798382..18799056expressed protein
LOC_Os09g31270OsAffx.17972.1.S1_at11/119+18800409..18802436glycoside hydrolase family 28 protein, putative, expressed
LOC_Os09g31280Os.15215.1.S1_at11/119+18804788..18807713OTU-like cysteine protease family protein, putative, expressed
LOC_Os09g31290OsAffx.6462.1.S1_at11/119+18810700..18811891hypothetical protein
LOC_Os09g31300Os.20361.1.A1_at11/119+18813191..18816005Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g31310Os.51627.1.A1_at11/119+18824515..18825255acetyltransferase, GNAT family protein, expressed
LOC_Os09g31319OsAffx.8598.1.S1_at1/119+18831048..18832707NA
LOC_Os09g31330NANA9+18836405..18837157hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6462.1.S1_at--493--6331Chr09:18811799..18811823 (25 bp)
GATGCAGTGGAGACCATCAGCCCAT
LOC_Os09g31290
OsAffx.6462.1.S1_at--959--1651Chr09:18811781..18811805 (25 bp)
AGCCCATCACAAGCTGTTTCCTGGG
LOC_Os09g31290
OsAffx.6462.1.S1_at--492--1971Chr09:18811753..18811777 (25 bp)
ACTTTTGTCTTGATATTAGGTCCAT
LOC_Os09g31290
OsAffx.6462.1.S1_at--189--10451Chr09:18811738..18811762 (25 bp)
TTAGGTCCATATTTGGCTGCCGTAC
LOC_Os09g31290
OsAffx.6462.1.S1_at--736--4491Chr09:18811720..18811744 (25 bp)
GCCGTACTCCTCGTTGCTTTGGAAG
LOC_Os09g31290
OsAffx.6462.1.S1_at--1052--5331Chr09:18811688..18811712 (25 bp)
GAAGTTCACAGCAATTTCGTGTGGA
LOC_Os09g31290
OsAffx.6462.1.S1_at--1123--5571Chr09:18810917..18810941 (25 bp)
GAAAGGCAGGCAGTGTGGCTCCCTC
LOC_Os09g31290
OsAffx.6462.1.S1_at--317--2392Chr08:21079434..21079529 (25 bp)
AAACATGGCCACACTTTGGAGAGTT
NONE
OsAffx.6462.1.S1_at--152--6151Chr09:18810834..18810858 (25 bp)
GAGGGTGGTCTCTCACGGCATAAAG
LOC_Os09g31290
OsAffx.6462.1.S1_at--519--6471Chr09:18810783..18810807 (25 bp)
GATACGGTTGGGTTTGACACCGGCT
LOC_Os09g31290
OsAffx.6462.1.S1_at--1010--2731Chr09:18810750..18810774 (25 bp)
AAGAAGCAGCCACTAGTCCTCCCAG
LOC_Os09g31290
Target Sequence 
GATGCAGTGGAGACCATCAGCCCATCACAAGCTGTTTCCTGGGGATACTTTTGTCTTGATATTAGGTCCATATTTGGCTG
CCGTACTCCTCGTTGCTTTGGAAGAGCATATGAAGTTCACAGCAATTTCGTGTGGATTTTCAAGAATATCTGTGGGGCTT
AAGTTTGAGAACAGTGAAATGAGAGGCAGGAAAAAGGTGAGCAAGGAAAAAAGAAAGGCAGGCAGTGTGGCTCCCTCTGC
TTTTGTTGGTGAGCCAACAAGAGACAAAAACATGGCCACACTTTGGAGAGTTTGGGAGGGTGGTCTCTCACGGCATAAAG
TCCTAAAAAAGGAGGGAATAGGAGGTGATACGGTTGGGTTTGACACCGGCTGGGCAGCCAAGAAGCAGCCACTAGTCCTC
CCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis