Browse Element(s) Details


OsAffx.6488.1.S1_at

Description tigr:9637.m03020
TID=OsAffx.6488.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 135697 cytochrome P-450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3594011/11Cytochrome P450 78A3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35910Os.2363.1.S1_a_at11/119+20671508..20672799Homeobox domain containing protein, expressed
LOC_Os09g35920Os.49331.1.S1_at11/119+20673353..20678159expressed protein
LOC_Os09g35930OsAffx.27522.1.S1_x_at4/119+20688444..20688733hypothetical protein
LOC_Os09g35940OsAffx.6488.1.S1_at11/119+20690835..20692635Cytochrome P450 78A3, putative, expressed
LOC_Os09g35950OsAffx.19542.3.S1_x_at4/119+20696949..20701172retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g35960Os.52975.1.S1_at11/119+20715932..20720655RabGAP/TBC domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010154biological_processfruit development
GO:0004497molecular_functionmonooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6488.1.S1_at--326--7311Chr09:20692048..20692072 (25 bp)
GTGCTGATCGAGTGGGTCTTAGCCC
LOC_Os09g35940
OsAffx.6488.1.S1_at--849--9991Chr09:20692067..20692091 (25 bp)
TAGCCCGGCTCGTGCTGCAGCAGGA
LOC_Os09g35940
OsAffx.6488.1.S1_at--528--5731Chr09:20692258..20692282 (25 bp)
GACGTACACGTGGACGGGTACCTGA
LOC_Os09g35940
OsAffx.6488.1.S1_at--53--8531Chr09:20692268..20692292 (25 bp)
TGGACGGGTACCTGATCCCCGCTGG
LOC_Os09g35940
OsAffx.6488.1.S1_at--1147--4211Chr09:20692286..20692310 (25 bp)
CCGCTGGCACCACCGCGATGGTGAA
LOC_Os09g35940
OsAffx.6488.1.S1_at--635--8671Chr09:20692313..20692337 (25 bp)
TGTGGGCCATAGCACACGACCCCGA
LOC_Os09g35940
OsAffx.6488.1.S1_at--190--1191Chr09:20692358..20692382 (25 bp)
AGTTTCGGCCCGAGCGGTTCATCGG
LOC_Os09g35940
OsAffx.6488.1.S1_at--333--1111Chr09:20692399..20692423 (25 bp)
AGTGTAATGGGTTCGGATCTCAGGC
LOC_Os09g35940
OsAffx.6488.1.S1_at--3--9151Chr09:20692453..20692477 (25 bp)
TGCCCCGGGAAGAGCCTCGCCATGG
LOC_Os09g35940
OsAffx.6488.1.S1_at--327--3491Chr09:20692473..20692497 (25 bp)
CATGGCCACGGTGGCATTCTGGCTT
LOC_Os09g35940
OsAffx.6488.1.S1_at--851--8491Chr09:20692492..20692516 (25 bp)
TGGCTTGCCACGCTGTTGCACGAGT
LOC_Os09g35940
Target Sequence 
GTGCTGATCGAGTGGGTCTTAGCCCGGCTCGTGCTGCAGCAGGACGTGCAGGCTCGGGTGCACGACGAGCTGGGCCGGGT
GGTTGGGCTGGACCGGGACGTGACCGAGTCCGACACGGCCTCACTCGTCTACCTCCACGCCGTCATCAAGGAGACGCTGA
GGCTGCACCCACCGGGCCCACTCCTCTCATGGGCCCGCCTGGCCACGTCGGACGTACACGTGGACGGGTACCTGATCCCC
GCTGGCACCACCGCGATGGTGAACATGTGGGCCATAGCACACGACCCCGACGTGTGGGCCGAGCCGATGGAGTTTCGGCC
CGAGCGGTTCATCGGGAAGGCGGCGGAGTTCAGTGTAATGGGTTCGGATCTCAGGCTCGCGCCGTTCGGATCGGGTCGGC
GGAGCTGCCCCGGGAAGAGCCTCGCCATGGCCACGGTGGCATTCTGGCTTGCCACGCTGTTGCACGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis