Browse Element(s) Details


OsAffx.6544.1.S1_at

Description tigr:9638.m00052
TID=OsAffx.6544.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0149011/11hypothetical protein
LOC_Os07g181705/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01480Os.46870.1.S1_at11/1110+285960..292214inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os10g01490OsAffx.6544.1.S1_at11/1110+300899..302476hypothetical protein
LOC_Os10g01490OsAffx.16321.1.S1_x_at8/1110+300899..302476hypothetical protein
LOC_Os10g01490Os.25910.1.S1_s_at1/1110+300899..302476hypothetical protein
LOC_Os10g01500OsAffx.6545.1.S1_at11/1110+305210..305559expressed protein
LOC_Os10g01510NANA10+312481..315650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01520Os.14491.2.S1_x_at3/1110+317160..320636transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01520Os.47463.1.S1_x_at1/1110+317160..320636transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6544.1.S1_at--313--8911Chr10:300942..300966 (25 bp)
TGAGCCATCCGGCTATGACCCGTCA
LOC_Os10g01490
OsAffx.6544.1.S1_at--601--4871Chr10:300953..300987 (25 bp)
GCTATGACCCGTCACAGGTCTGTGA
LOC_Os10g01490
OsAffx.6544.1.S1_at--1028--3134Chr10:302040..302150 (25 bp)
AATTCAGACCCCTCACAGGTGACTT
LOC_Os10g01490
OsAffx.6544.1.S1_at--64--1811Chr10:302047..302194 (25 bp)
ACCCCTCACAGGTGACTTATGTCAT
LOC_Os10g01490
OsAffx.6544.1.S1_at--538--3472Chr10:302178..302202 (25 bp)
CAGGTGACTTATGTCATCAGTGACC
LOC_Os10g01490
OsAffx.6544.1.S1_at--781--1112Chr10:302196..302220 (25 bp)
AGTGACCATTGGTCTGTGACCACAC
LOC_Os10g01490
OsAffx.6544.1.S1_at--1059--12Chr10:302203..302227 (25 bp)
ATTGGTCTGTGACCACACGCTTTAT
LOC_Os10g01490
OsAffx.6544.1.S1_at--853--7172Chr10:302207..302231 (25 bp)
GTCTGTGACCACACGCTTTATCCGT
LOC_Os10g01490
OsAffx.6544.1.S1_at--384--3352Chr10:302218..302436 (25 bp)
CACGCTTTATCCGTCACAGGGTGTA
LOC_Os10g01490
OsAffx.6544.1.S1_at--493--4871Chr10:302221..302439 (25 bp)
GCTTTATCCGTCACAGGGTGTACTT
LOC_Os10g01490
OsAffx.6544.1.S1_at--796--4111Chr10:302092..302446 (25 bp)
CCGTCACAGGGTGTACTTAACAACA
LOC_Os10g01490
Target Sequence 
TGAGCCATCCGGCTATGACCCGTCACAGGTCTGTGACGGGTCTCAATTCAGACCCCTCACAGGTGACTTATGTCATCAGT
GACCATTGGTCTGTGACCACACGCTTTATCCGTCACAGGGTGTACTTAACAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis