Browse Element(s) Details


OsAffx.6545.1.S1_at

Description tigr:9638.m00053
TID=OsAffx.6545.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0150011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01480Os.46870.1.S1_at11/1110+285960..292214inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os10g01490OsAffx.6544.1.S1_at11/1110+300899..302476hypothetical protein
LOC_Os10g01490OsAffx.16321.1.S1_x_at8/1110+300899..302476hypothetical protein
LOC_Os10g01490Os.25910.1.S1_s_at1/1110+300899..302476hypothetical protein
LOC_Os10g01500OsAffx.6545.1.S1_at11/1110+305210..305559expressed protein
LOC_Os10g01510NANA10+312481..315650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01520Os.14491.2.S1_x_at3/1110+317160..320636transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01520Os.47463.1.S1_x_at1/1110+317160..320636transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01530OsAffx.18071.1.S1_at11/1110+328501..331850Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6545.1.S1_at--836--9111Chr10:305489..305513 (25 bp)
TGCTGATGCAGCTGGTCCTAGCTGA
LOC_Os10g01500
OsAffx.6545.1.S1_at--494--4751Chr10:305488..305512 (25 bp)
GCTGATGCAGCTGGTCCTAGCTGAG
LOC_Os10g01500
OsAffx.6545.1.S1_at--75--8871Chr10:305486..305510 (25 bp)
TGATGCAGCTGGTCCTAGCTGAGGT
LOC_Os10g01500
OsAffx.6545.1.S1_at--1131--9032Chr10:305483..305507 (25 bp)
TGCAGCTGGTCCTAGCTGAGGTCGC
LOC_Os10g01500
OsAffx.6545.1.S1_at--447--1612Chr10:305480..305504 (25 bp)
AGCTGGTCCTAGCTGAGGTCGCCCA
LOC_Os10g01500
OsAffx.6545.1.S1_at--320--4711Chr10:305479..305503 (25 bp)
GCTGGTCCTAGCTGAGGTCGCCCAT
LOC_Os10g01500
OsAffx.6545.1.S1_at--850--8591Chr10:305477..305501 (25 bp)
TGGTCCTAGCTGAGGTCGCCCATCT
LOC_Os10g01500
OsAffx.6545.1.S1_at--993--7252Chr10:305475..305499 (25 bp)
GTCCTAGCTGAGGTCGCCCATCTGA
LOC_Os10g01500
OsAffx.6545.1.S1_at--1--4311Chr10:305473..305497 (25 bp)
CCTAGCTGAGGTCGCCCATCTGATG
LOC_Os10g01500
OsAffx.6545.1.S1_at--523--1611Chr10:305470..305494 (25 bp)
AGCTGAGGTCGCCCATCTGATGTCG
LOC_Os10g01500
OsAffx.6545.1.S1_at--457--3551Chr10:305457..305481 (25 bp)
CATCTGATGTCGCTGCTCGTCTGGG
LOC_Os10g01500
Target Sequence 
TGCTGATGCAGCTGGTCCTAGCTGAGGTCGCCCATCTGATGTCGCTGCTCGTCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis