Browse Element(s) Details


Os.46870.1.S1_at

Description gb:AK106544.1
DB_XREF= gi:32991753
TID=Os.46870.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46870 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative inositol 1,3,4-trisphosphate 56-kinase (OSJNBa0071K19.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-F02, full insert sequence.
FL= gb:AK106544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0148011/11inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01460OsAffx.30227.1.S1_at11/1110+266298..266711hypothetical protein
LOC_Os10g01470Os.27388.1.S1_s_at11/1110+268877..271094Homeobox-leucine zipper protein HAT22, putative, expressed
LOC_Os10g01470Os.49759.1.S1_x_at1/1110+268877..271094Homeobox-leucine zipper protein HAT22, putative, expressed
LOC_Os10g01480Os.46870.1.S1_at11/1110+285960..292214inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os10g01490OsAffx.6544.1.S1_at11/1110+300899..302476hypothetical protein
LOC_Os10g01490OsAffx.16321.1.S1_x_at8/1110+300899..302476hypothetical protein
LOC_Os10g01490Os.25910.1.S1_s_at1/1110+300899..302476hypothetical protein
LOC_Os10g01500OsAffx.6545.1.S1_at11/1110+305210..305559expressed protein
LOC_Os10g01510NANA10+312481..315650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01520Os.14491.2.S1_x_at3/1110+317160..320636transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01520Os.47463.1.S1_x_at1/1110+317160..320636transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0046853biological_processinositol and derivative phosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003824molecular_functioncatalytic activity
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46870.1.S1_at--244--5351Chr10:287547..287568 (22 bp)
GAAGTTGACCCTTCTATTGCTGAAC
LOC_Os10g01480
Os.46870.1.S1_at--1124--5911Chr10:286975..287072 (25 bp)
GAGCTTCGGCGCAGACTGGGTCTTA
LOC_Os10g01480
Os.46870.1.S1_at--791--2911Chr10:286912..286936 (25 bp)
AAGGATCGGTACTATGTCATTGACA
LOC_Os10g01480
Os.46870.1.S1_at--559--231Chr10:286310..286334 (25 bp)
ATATTCATTGACTTCCTACTCAGCC
LOC_Os10g01480
Os.46870.1.S1_at--694--9251Chr10:286297..286321 (25 bp)
TCCTACTCAGCCTTGTGCAAAACAA
LOC_Os10g01480
Os.46870.1.S1_at--734--9211Chr10:286229..286253 (25 bp)
TCCAGCCGAGAGTGATACCATTGAC
LOC_Os10g01480
Os.46870.1.S1_at--145--8271Chr10:286121..286145 (25 bp)
GGCAGATGCCTGACGAGCAGTTCAA
LOC_Os10g01480
Os.46870.1.S1_at--1126--2931Chr10:286088..286112 (25 bp)
AAGGCTGCTTAGTGCCAGGACGATA
LOC_Os10g01480
Os.46870.1.S1_at--804--7271Chr10:286015..286039 (25 bp)
GTGCCCAACCTGTGTAAATCGTTCA
LOC_Os10g01480
Os.46870.1.S1_at--50--9851Chr10:286001..286025 (25 bp)
TAAATCGTTCACTGAGTTCCAGCCT
LOC_Os10g01480
Os.46870.1.S1_at--171--6071Chr10:285988..286012 (25 bp)
GAGTTCCAGCCTGAAGCTTTTCAAC
LOC_Os10g01480
Target Sequence 
GAAGTTGACCCTTCTATTGCTGAACTTCCTCCAAAGCCGCTTCTAGAGAAACTTGGGAGGGAGCTTCGGCGCAGACTGGG
TCTTAGACTGTTTAACTTCGATATGATTAGAGAGCATGGAAGAAAGGATCGGTACTATGTCATTGACATCAACTATTTTC
CTGGATATGGGAAAATGCCAGGCTATGAGCATATATTCATTGACTTCCTACTCAGCCTTGTGCAAAACAAGTACAAGAGG
CGTTTAAGCGGGAGCTGAAGTGTAGAGAATATATCCAGCCGAGAGTGATACCATTGACAACAAAATGCCNCCAATGTTAG
CTGGCAGCTTAGATAGATTTTTTTTTTCAGTTTGTACAGGTCAAGGAGATGTTAGCTTTGAGGCAGATGCCTGACGAGCA
GTTCAAAAAAAAAAAAAAGGCTGCTTAGTGCCAGGACGATATTAAGAACAAANNNNAAAAGGGAAAGAGAAAAAAGGTTC
GGTCTCTCCGTGCCCAACCTGTGTAAATCGTTCACTGAGTTCCAGCCTGAAGCTTTTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis