Browse Element(s) Details


OsAffx.6609.1.S1_at

Description tigr:9638.m00756
TID=OsAffx.6609.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0885011/11Nodulin-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08810Os.27691.1.S1_x_at1/1110+4532950..4534102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08820NANA10+4534354..4538919retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08830OsAffx.18177.1.S1_s_at11/1110+4541783..4547061hypothetical protein
LOC_Os10g08830Os.41415.1.S1_at2/1110+4541783..4547061hypothetical protein
LOC_Os10g08830Os.27180.1.S1_at1/1110+4541783..4547061hypothetical protein
LOC_Os10g08840Os.10449.1.S1_a_at11/1110+4549322..4554791esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os10g08850OsAffx.6609.1.S1_x_at11/1110+4556819..4558621Nodulin-like family protein, expressed
LOC_Os10g08850OsAffx.6609.1.S1_at11/1110+4556819..4558621Nodulin-like family protein, expressed
LOC_Os10g08879OsAffx.6610.1.A1_at11/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08879Os.46716.1.S1_at11/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08879Os.46716.2.S1_at10/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6609.1.S1_at--687--3851Chr10:4557349..4557373 (25 bp)
CTGTCGCGCTACAGGTTTCCGCGGC
LOC_Os10g08850
OsAffx.6609.1.S1_at--706--8411Chr10:4557327..4557351 (25 bp)
GGCCGCTGATGCTCACGCTGGTGCT
LOC_Os10g08850
OsAffx.6609.1.S1_at--251--8371Chr10:4557214..4557238 (25 bp)
GGCGGGCTGTACACGCTGCTCTTCT
LOC_Os10g08850
OsAffx.6609.1.S1_at--299--4811Chr10:4557197..4557221 (25 bp)
GCTCTTCTCCATCGTCTCCGAGGTG
LOC_Os10g08850
OsAffx.6609.1.S1_at--769--7591Chr10:4557137..4557161 (25 bp)
GGGCATGGTGGCGAGCCCCATCGGC
LOC_Os10g08850
OsAffx.6609.1.S1_at--273--4331Chr10:4557120..4557144 (25 bp)
CCATCGGCGCGTACATATTCAACGT
LOC_Os10g08850
OsAffx.6609.1.S1_at--69--4651Chr10:4557112..4557136 (25 bp)
GCGTACATATTCAACGTGCGCGTCG
LOC_Os10g08850
OsAffx.6609.1.S1_at--891--2071Chr10:4557108..4557132 (25 bp)
ACATATTCAACGTGCGCGTCGCCGG
LOC_Os10g08850
OsAffx.6609.1.S1_at--829--4031Chr10:4556991..4557015 (25 bp)
CGTTCCTGATCGTGACGGCGGCGAC
LOC_Os10g08850
OsAffx.6609.1.S1_at--819--4491Chr10:4556959..4556983 (25 bp)
GCCGTGATCGTGTCGCTGGTGCTGG
LOC_Os10g08850
OsAffx.6609.1.S1_at--1084--9531Chr10:4556901..4556925 (25 bp)
TCTACGCGAGGTTCAAGGCGGCGGC
LOC_Os10g08850
Target Sequence 
CTGTCGCGCTACAGGTTTCCGCGGCCGCTGATGCTCACGCTGGTGCTCGTCGTCTCCAGCGCCGGCTACCTCCTCATCGC
GCTCGGCGTGCCGCACGGCCTGTACGCGGCGTCCGTCGTCGTCGGCTTCAGCTTCGGCGGGCTGTACACGCTGCTCTTCT
CCATCGTCTCCGAGGTGTTCGGGCTCAAGTACTACGCCACGCTCTACAACCTGGGCATGGTGGCGAGCCCCATCGGCGCG
TACATATTCAACGTGCGCGTCGCCGGCGCGCTGTACGACGCCGAGGCGGCGAGGCAGAACGGCGGCGGCGGCGCCGCCGG
ACACAGGGCGTGCGCCGGCGTGCGGTGCTTCAGGGCGTCGTTCCTGATCGTGACGGCGGCGACGTTCTTCGCCGTGATCG
TGTCGCTGGTGCTGGTGTGGAGGACGAGGGGGTTCTACAGGGGGGACATCTACGCGAGGTTCAAGGCGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis