Browse Element(s) Details


OsAffx.6686.1.S1_at

Description tigr:9638.m01482
TID=OsAffx.6686.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g178809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17820Os.27691.1.S1_x_at1/1110+8682754..8688484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17830NANA10+8693742..8694443hypothetical protein
LOC_Os10g17840NANA10+8696460..8697957retrotransposon protein, putative, unclassified
LOC_Os10g17850OsAffx.22699.1.S1_x_at2/1110+8698669..8700249retrotransposon protein, putative, unclassified
LOC_Os10g17860Os.52731.1.S1_at1/1110+8700620..8701924retrotransposon protein, putative, unclassified
LOC_Os10g17870NANA10+8702326..8705512hypothetical protein
LOC_Os10g17880OsAffx.6686.1.S1_at9/1110+8707240..8709014hypothetical protein
LOC_Os10g17890OsAffx.30441.1.S1_at11/1110+8710622..8711533wall-associated kinase 3, putative
LOC_Os10g17900Os.9523.1.S1_at1/1110+8713170..8720349retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17910OsAffx.18277.1.S1_at11/1110+8724773..8726138Protein kinase domain containing protein
LOC_Os10g17920OsAffx.20540.1.S1_at11/1110+8728705..8730287retrotransposon protein, putative, unclassified, expressed
LOC_Os10g17930Os.46855.1.S1_at11/1110+8731422..8733068F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6686.1.S1_at--471--591Chr10:8708996..8709020 (25 bp)
ATGCCAATGGCCAAATCCGCGTGGG
NONE
OsAffx.6686.1.S1_at--57--4011NONE
CGTGCCCCACGAATAAGAAAAGAAG
NONE
OsAffx.6686.1.S1_at--219--1411Chr10:8707679..8707703 (25 bp)
AGACTTGTATGGTATAGCGCCGTGC
LOC_Os10g17880
OsAffx.6686.1.S1_at--206--10811Chr10:8707675..8707699 (25 bp)
TTGTATGGTATAGCGCCGTGCATTT
LOC_Os10g17880
OsAffx.6686.1.S1_at--612--6891Chr10:8707668..8707692 (25 bp)
GTATAGCGCCGTGCATTTCGTTATG
LOC_Os10g17880
OsAffx.6686.1.S1_at--964--4492Chr10:8707661..8707685 (25 bp)
GCCGTGCATTTCGTTATGCTGTACA
LOC_Os10g17880
OsAffx.6686.1.S1_at--724--3551Chr10:8707400..8707662 (25 bp)
CATCTCGATCAGGTGTTTACGTCAT
LOC_Os10g17880
OsAffx.6686.1.S1_at--89--9651Chr10:8707392..8707415 (24 bp)
TCAGGTGTTTACGTCATCTGCATCC
LOC_Os10g17880
OsAffx.6686.1.S1_at--478--9411Chr10:8707348..8707372 (25 bp)
TCGTCGACGTCATTTCTCGAAGCCG
LOC_Os10g17880
OsAffx.6686.1.S1_at--893--7111Chr10:8707340..8707364 (25 bp)
GTCATTTCTCGAAGCCGCCGGTCGT
LOC_Os10g17880
OsAffx.6686.1.S1_at--236--7571Chr10:8707271..8707295 (25 bp)
GGGCGTATGGGTGGTCGGTGTTGAT
LOC_Os10g17880
Target Sequence 
ATGCCAATGGCCAAATCCGCGTGGGGCAGAGGCGGTGGAGGCCGCGTAGGGGCGGAGGCGAAGAAGGCCGTGTTGGCGAA
GAGGCGCGCGGAGGCGCGGTGGTTAACCGTGGTTTTTTCTATTACCGTGCCCCACGAATAAGAAAAGAAGAACAGAAAGA
CTTGTATGGTATAGCGCCGTGCATTTCGTTATGCTGTACATCTCGATCAGGTGTTTACGTCATCTGCATCCAAAGCCGTC
GCCACTCTCCTCGTCGACGTCATTTCTCGAAGCCGCCGGTCGTCGTTGTCGCCGTCGCCGCTGTCCTCGTCCTCGTTGTT
GCCATGGGGGCGTATGGGTGGTCGGTGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis