Browse Element(s) Details


OsAffx.6775.1.S1_x_at

Description tigr:9638.m02270
TID=OsAffx.6775.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2659011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26550NANA10+13509293..13509829hypothetical protein
LOC_Os10g26560OsAffx.20357.1.S1_at11/1110+13511726..13517239expressed protein
LOC_Os10g26570Os.17997.1.S1_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed
LOC_Os10g26570Os.17997.2.S1_x_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed
LOC_Os10g26590OsAffx.6775.1.S1_at11/1110+13531523..13532206AP2 domain containing protein
LOC_Os10g26590OsAffx.6775.1.S1_x_at11/1110+13531523..13532206AP2 domain containing protein
LOC_Os10g26600Os.5819.1.S1_at11/1110+13535705..13537787Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os10g26610Os.5143.1.S1_at11/1110+13538758..13543896expressed protein
LOC_Os10g26620Os.5736.1.S1_s_at11/1110+13551049..13553774Dof domain, zinc finger family protein, expressed
LOC_Os10g26620Os.5736.2.S1_x_at11/1110+13551049..13553774Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6775.1.S1_x_at--347--7551Chr10:13531606..13531630 (25 bp)
GTGGCGAGGGTTCATCACCAACAAG
LOC_Os10g26590
OsAffx.6775.1.S1_x_at--635--4611Chr10:13531609..13531633 (25 bp)
GCGAGGGTTCATCACCAACAAGTTC
LOC_Os10g26590
OsAffx.6775.1.S1_x_at--969--7671Chr10:13531613..13531637 (25 bp)
GGGTTCATCACCAACAAGTTCGGGA
LOC_Os10g26590
OsAffx.6775.1.S1_x_at--347--9611Chr10:13531617..13531641 (25 bp)
TCATCACCAACAAGTTCGGGAGGCG
LOC_Os10g26590
OsAffx.6775.1.S1_x_at--1025--4631Chr10:13531754..13531778 (25 bp)
GCGTTCAGCGACACGGAGCTCCGGT
LOC_Os10g26590
OsAffx.6775.1.S1_x_at--533--951Chr10:13532009..13532033 (25 bp)
AGGAACAAGGTGCACGACGCGGCGT
LOC_Os10g26590
OsAffx.6775.1.S1_x_at--892--7531Chr10:13532032..13532056 (25 bp)
GTGGCTGAGGAGCTACCTGCGGCGG
LOC_Os10g26590
OsAffx.6775.1.S1_x_at--872--9451Chr10:13532067..13532091 (25 bp)
TCGGCGCGACGTTCGAGGACGAGAA
LOC_Os10g26590
OsAffx.6775.1.S1_x_at--90--971Chr10:13532082..13532106 (25 bp)
AGGACGAGAACAGGTGGCCGCCCGT
LOC_Os10g26590
OsAffx.6775.1.S1_x_at--980--4911Chr10:13532139..13532163 (25 bp)
GCTTCGCCGGCAACGAGCTGGTGTA
LOC_Os10g26590
OsAffx.6775.1.S1_x_at--522--2591Chr10:13532150..13532174 (25 bp)
AACGAGCTGGTGTACCTCCCCTATG
LOC_Os10g26590
Target Sequence 
GTGGCGAGGGTTCATCACCAACAAGTTCGGGAGGCGGTACGGCGTCGGCGACCACGGCACGCCGGAGGAGGCGGCGCTGG
CGCACGACCGCGCCATCCTCGCCATCCTGGGCGCGCACGCTTCGCCGGCGGCGCTCAACTTCCGCGCCGCGTTCAGCGAC
ACGGAGCTCCGGTTCCTCCGCGGGCCGCACGCGCCGTCGCGCCGCGCCGCGGGCGTCGTCGCCGCGGTCATGCGCGGCGC
CGCGTTCGACGCCGCGCTCGAGCGGTTCGCGGCGCGCGCCTACGACGCGCACACCGACCCGGAGCTCGCGCTCGACGTCG
CCGCGTTCCGCCTCGCCACCCGCGACGCCGGCACGCCGCTGGCGCAGCCGGACGCCGAGAGGGCGGCGTTCGTGGCGGCG
GCGAGGAACAAGGTGCACGACGCGGCGTGGCTGAGGAGCTACCTGCGGCGGCGGCGGCTGGTCGGCGCGACGTTCGAGGA
CGAGAACAGGTGGCCGCCCGTGGTGCCGCCGGCGGTGGCCGACGTCGGCGACGGCTTCGCCGGCAACGAGCTGGTGTACC
TCCCCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6775.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis