Browse Element(s) Details


OsAffx.6777.1.S1_at

Description tigr:9638.m02285
TID=OsAffx.6777.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2674010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26700Os.9009.1.S1_x_at11/1110+13608611..13609669YGL010w, putative, expressed
LOC_Os10g26700Os.9009.1.S1_at11/1110+13608611..13609669YGL010w, putative, expressed
LOC_Os10g26710OsAffx.6776.1.S1_at11/1110+13610669..13611054hypothetical protein
LOC_Os10g26720Os.51603.1.S1_at1/1110+13614800..13620101exonuclease family protein, expressed
LOC_Os10g26730Os.11312.1.S1_s_at11/1110+13623053..13626656exonuclease family protein, putative, expressed
LOC_Os10g26730Os.11312.1.S1_at11/1110+13623053..13626656exonuclease family protein, putative, expressed
LOC_Os10g26740OsAffx.6777.1.S1_at10/1110+13633970..13635010hypothetical protein
LOC_Os10g26750OsAffx.18419.1.S1_at9/1110+13647037..13648029hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6777.1.S1_at--452--9691NONE
TCACTTCCTGGCTCTTGTGGCTACT
NONE
OsAffx.6777.1.S1_at--1011--9271Chr10:13634073..13634093 (21 bp)
TCCTGGCTCTTGTGGCTACTCCAAA
LOC_Os10g26740
OsAffx.6777.1.S1_at--884--8311Chr10:13634069..13634093 (25 bp)
GGCTCTTGTGGCTACTCCAAAGACT
LOC_Os10g26740
OsAffx.6777.1.S1_at--978--1971Chr10:13634056..13634080 (25 bp)
ACTCCAAAGACTTCAAGAGATGAAC
LOC_Os10g26740
OsAffx.6777.1.S1_at--708--9711Chr10:13634044..13634068 (25 bp)
TCAAGAGATGAACAGCGGAAGCGAC
LOC_Os10g26740
OsAffx.6777.1.S1_at--330--1291Chr10:13634039..13634063 (25 bp)
AGATGAACAGCGGAAGCGACTGAAA
LOC_Os10g26740
OsAffx.6777.1.S1_at--505--5411Chr10:13634027..13634051 (25 bp)
GAAGCGACTGAAAGAGCAGACCATT
LOC_Os10g26740
OsAffx.6777.1.S1_at--762--3851Chr10:13634020..13634044 (25 bp)
CTGAAAGAGCAGACCATTGGTGACA
LOC_Os10g26740
OsAffx.6777.1.S1_at--942--1731Chr10:13634008..13634032 (25 bp)
ACCATTGGTGACATCTCAGTCGCAG
LOC_Os10g26740
OsAffx.6777.1.S1_at--647--31Chr10:13634005..13634029 (25 bp)
ATTGGTGACATCTCAGTCGCAGGAA
LOC_Os10g26740
OsAffx.6777.1.S1_at--844--7331Chr10:13634001..13634025 (25 bp)
GTGACATCTCAGTCGCAGGAACAGA
LOC_Os10g26740
Target Sequence 
TCACTTCCTGGCTCTTGTGGCTACTCCAAAGACTTCAAGAGATGAACAGCGGAAGCGACTGAAAGAGCAGACCATTGGTG
ACATCTCAGTCGCAGGAACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis