Browse Element(s) Details


OsAffx.6790.1.S1_at

Description tigr:9638.m02390
TID=OsAffx.6790.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2828011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28240Os.46832.1.S1_at11/1110+14352601..14355971Calcium-transporting ATPase 13, plasma membrane-type, putative, expressed
LOC_Os10g28250OsAffx.25007.2.S1_s_at9/1110+14357843..14359102retrotransposon protein, putative, LINE subclass
LOC_Os10g28260OsAffx.30567.1.S1_at10/1110+14372648..14373672hypothetical protein
LOC_Os10g28280OsAffx.6790.1.S1_at11/1110+14378077..14380116hypothetical protein
LOC_Os10g28280Os.50619.1.S1_at1/1110+14378077..14380116hypothetical protein
LOC_Os10g28280Os.50619.1.S1_x_at1/1110+14378077..14380116hypothetical protein
LOC_Os10g28290OsAffx.8122.1.S1_at10/1110+14381545..14383708expressed protein
LOC_Os10g28310NANA10+14396428..14401263retrotransposon protein, putative, unclassified
LOC_Os10g28320Os.38371.1.S1_a_at10/1110+14402113..14407215Auxin-induced protein PCNT115, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6790.1.S1_at--580--8451Chr10:14379226..14379245 (20 bp)
TGGCGAGGCTCCTGTGGGCCCCACG
LOC_Os10g28280
OsAffx.6790.1.S1_at--3--9511Chr10:14379886..14379910 (25 bp)
TCTCCTCCCCTGTGGCATGATCGAC
LOC_Os10g28280
OsAffx.6790.1.S1_at--252--5071Chr10:14379914..14379938 (25 bp)
GCAGCGGCGTGGATCAACATGGGTG
LOC_Os10g28280
OsAffx.6790.1.S1_at--777--6591Chr10:14379947..14379971 (25 bp)
GATTGACGCAGCGATGGCGGATCAA
LOC_Os10g28280
OsAffx.6790.1.S1_at--357--371Chr10:14379967..14379991 (25 bp)
ATCAATGCGGAGATGGCGGATCGAC
LOC_Os10g28280
OsAffx.6790.1.S1_at--1142--1311Chr10:14379977..14380001 (25 bp)
AGATGGCGGATCGACACGGTGGCGG
LOC_Os10g28280
OsAffx.6790.1.S1_at--507--4071Chr10:14380005..14380029 (25 bp)
CGAGGGTCGATGCAGCGGCGGTGGA
LOC_Os10g28280
OsAffx.6790.1.S1_at--1096--8351Chr10:14380021..14380045 (25 bp)
GGCGGTGGATTGTCGCAGCCCTTCT
LOC_Os10g28280
OsAffx.6790.1.S1_at--158--7731Chr10:14380024..14380048 (25 bp)
GGTGGATTGTCGCAGCCCTTCTCTC
LOC_Os10g28280
OsAffx.6790.1.S1_at--649--10591Chr10:14380060..14380084 (25 bp)
TTCTCCATCTTCTCCAGAGCGAGAA
LOC_Os10g28280
OsAffx.6790.1.S1_at--919--3811Chr10:14380062..14380086 (25 bp)
CTCCATCTTCTCCAGAGCGAGAATG
LOC_Os10g28280
Target Sequence 
TGGCGAGGCTCCTGTGGGCCCCACGGTCAACCATGCCGAGCTCCCCCACCCTCTCACCTCCCACCAGCTCAAGCTCTCCT
CTCCGGCGACATCGTCGCCTCTCCTCTCCTCTCTCCTCCCCTGTGGCATGATCGACGCGGCAGCGGCGTGGATCAACATG
GGTGGTGGAAGGGATTGACGCAGCGATGGCGGATCAATGCGGAGATGGCGGATCGACACGGTGGCGGCGGCGAGGGTCGA
TGCAGCGGCGGTGGATTGTCGCAGCCCTTCTCTCCAGTCCACCCCTTCTCCATCTTCTCCAGAGCGAGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis