Browse Element(s) Details


OsAffx.7012.1.S1_at

Description tigr:9639.m00531
TID=OsAffx.7012.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0605011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06040Os.35800.1.S1_s_at11/1111+2856728..2864854phox domain-containing protein, putative, expressed
LOC_Os11g06040Os.35800.1.S1_at8/1111+2856728..2864854phox domain-containing protein, putative, expressed
LOC_Os11g06050OsAffx.7012.1.S1_at11/1111+2868808..2871684hypothetical protein
LOC_Os11g06059NANA11+2872261..2872888NA
LOC_Os11g06070Os.51879.1.S1_at11/1111+2890454..2892054expressed protein
LOC_Os11g06080OsAffx.30837.1.S1_at11/1111+2895222..2896605hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7012.1.S1_at--29--1511Chr11:2870059..2870083 (25 bp)
AGCACTGCAGCTGGTAGCCGTGTTC
LOC_Os11g06050
OsAffx.7012.1.S1_at--472--4251Chr11:2870042..2870066 (25 bp)
CCGTGTTCGTGTATGTTATGCTTAA
LOC_Os11g06050
OsAffx.7012.1.S1_at--58--2211Chr11:2869979..2870003 (25 bp)
ACAAAATTCTCACCCATTCTGAAGC
LOC_Os11g06050
OsAffx.7012.1.S1_at--492--2471Chr11:2869852..2869975 (25 bp)
AACACATAACATTGGCTTGCTCTCA
LOC_Os11g06050
OsAffx.7012.1.S1_at--571--8851Chr11:2869820..2869844 (25 bp)
TGATCGCTGTATTAGCTGCTATCAT
LOC_Os11g06050
OsAffx.7012.1.S1_at--1152--391Chr11:2869800..2869824 (25 bp)
ATCATCCAGATTCAGTTCCAATTCC
LOC_Os11g06050
OsAffx.7012.1.S1_at--1017--2991Chr11:2869207..2869231 (25 bp)
AATGATGCTCCACATATCCGCAAGT
LOC_Os11g06050
OsAffx.7012.1.S1_at--1093--1231Chr11:2869137..2869161 (25 bp)
AGTTGTGGGCTCAAATCTCTCAAGG
LOC_Os11g06050
OsAffx.7012.1.S1_at--966--5831Chr11:2868979..2869003 (25 bp)
GACCATTGCAGCTCTTATTGTCAAC
LOC_Os11g06050
OsAffx.7012.1.S1_at--302--211Chr11:2868946..2868970 (25 bp)
ATTTGCAGCGAGATACATTGGTCCA
LOC_Os11g06050
OsAffx.7012.1.S1_at--143--9711Chr11:2868838..2868862 (25 bp)
TCACAAGGATGATTTCCCCAGTGCT
LOC_Os11g06050
Target Sequence 
AGCACTGCAGCTGGTAGCCGTGTTCGTGTATGTTATGCTTAAGGTTGGTGACAAGAAATATGTTCTCTCTGAAGAGCGCA
ACAAAATTCTCACCCATTCTGAAGCAAAAACACATAACATTGGCTTGCTCTCATTTTTCATGATCGCTGTATTAGCTGCT
ATCATCCAGATTCAGTTCCAATTCCCTTTTCCCGAAAACTACAGCACACTAGCGAAAGCTATTGGTATTTTTGGGATGTT
CTTTCAGGTGAAGGGAGAGAATGGTTTAAAAAATGATGCTCCACATATCCGCAAGTTGAAAATCACTGCAACTCTGATAA
AGTTCATGACCTTATCTTATGAGTTGTGGGCTCAAATCTCTCAAGGATACAGACAATCTGTTCTAACAAAACCACTCTGT
GATATGACCATTGCAGCTCTTATTGTCAACTGTGTACTATTTGCAGCGAGATACATTGGTCCAAAAACCATAAAGGAATA
TTTCTTCCCACCCAGCCCACCAACAGAGACTCGACAGGAATATTTTACAAGGACATTGGCTTTACTTCACAAGGATGATT
TCCCCAGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis