Browse Element(s) Details


OsAffx.7030.1.S1_x_at

Description tigr:9639.m00654
TID=OsAffx.7030.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0717011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07140OsAffx.30855.1.S1_x_at11/1111+3551666..3553776Protein kinase domain containing protein, expressed
LOC_Os11g07140OsAffx.30855.1.S1_at11/1111+3551666..3553776Protein kinase domain containing protein, expressed
LOC_Os11g07140OsAffx.18717.1.S1_at1/1111+3551666..3553776Protein kinase domain containing protein, expressed
LOC_Os11g07150NANA11+3559500..3561268retrotransposon protein, putative, unclassified
LOC_Os11g07160OsAffx.18718.1.S1_at11/1111+3561605..3564742Leucine Rich Repeat family protein
LOC_Os11g07170OsAffx.7030.1.S1_x_at11/1111+3576994..3580062Leucine Rich Repeat family protein, expressed
LOC_Os11g07170OsAffx.7030.1.S1_at11/1111+3576994..3580062Leucine Rich Repeat family protein, expressed
LOC_Os11g07180OsAffx.30856.1.S1_at11/1111+3585204..3588351Leucine Rich Repeat family protein
LOC_Os11g07190OsAffx.7031.1.S1_at11/1111+3589704..3590827hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7030.1.S1_x_at--318--10651Chr11:3579407..3579431 (25 bp)
TTGAGTACCTCCACCATAACAAACA
LOC_Os11g07170
OsAffx.7030.1.S1_x_at--348--5411Chr11:3579456..3579480 (25 bp)
GAAGCCTAGCAACATTCTTCCGGAT
LOC_Os11g07170
OsAffx.7030.1.S1_x_at--854--7651Chr11:3579540..3579564 (25 bp)
GGGATCCAATGACTCCAACTCAATT
LOC_Os11g07170
OsAffx.7030.1.S1_x_at--534--5431Chr11:3579584..3579608 (25 bp)
GAACCATTTGGATATGTTGCCCCAG
LOC_Os11g07170
OsAffx.7030.1.S1_x_at--1115--6671Chr11:3579599..3579680 (25 bp)
GTTGCCCCAGCATAGTATCATTTCG
LOC_Os11g07170
OsAffx.7030.1.S1_x_at--567--391Chr11:3579672..3579696 (25 bp)
ATCATTTCGAGTAAACCGTTCCCAT
LOC_Os11g07170
OsAffx.7030.1.S1_x_at--1139--6691Chr11:3579689..3579713 (25 bp)
GTTCCCATCCATGGCGGTCCATAGA
LOC_Os11g07170
OsAffx.7030.1.S1_x_at--194--871Chr11:3579699..3579723 (25 bp)
ATGGCGGTCCATAGAGTATGCTGCA
LOC_Os11g07170
OsAffx.7030.1.S1_x_at--885--2911Chr11:3579817..3579841 (25 bp)
AAGGATGGCCTCGACATTGTCAAGT
LOC_Os11g07170
OsAffx.7030.1.S1_x_at--915--6851Chr11:3579840..3579864 (25 bp)
GTTTGTCGAGGTGAACTTTCCAGAT
LOC_Os11g07170
OsAffx.7030.1.S1_x_at--197--2771Chr11:3579924..3579948 (25 bp)
AAGAGTCTTGTGTTGTTTAAATTCA
LOC_Os11g07170
Target Sequence 
TTGAGTACCTCCACCATAACAAACAAGAAACTATTGTCCATTGTGATCTGAAGCCTAGCAACATTCTTCCGGATGACGAT
ATGATAGCTCATGTTGGGGACTTTGGCCTTGCAAGGTTCAAAATTGACTTCATGGGATCCAATGACTCCAACTCAATTTA
CTCAACTGCAATAAAGGGAACCATTTGGATATGTTGCCCCAGCATAGTATCATTTCGAGTAAACCGTTCCCATCCATGGC
GGTCCATAGAGTATGCTGCAGGTGCTGAAGTGTCGACCTATGGAGATGTCTTTAGCTTTGGAGTTGTTCTACTAGAAATA
TTTTTACGAAAGAAACCAACCGACGATATGTTCAAGGATGGCCTCGACATTGTCAAGTTTGTCGAGGTGAACTTTCCAGA
TAGGTTACCGCAGATTGTTGACCCAGAATTACTACAAGAAACACATGTGGGCACAAAAGAAAGAGTCTTGTGTTGTTTAA
ATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7030.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis