Browse Element(s) Details


OsAffx.30856.1.S1_at

Description tigr:9639.m00655
TID=OsAffx.30856.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0718011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07150NANA11+3559500..3561268retrotransposon protein, putative, unclassified
LOC_Os11g07160OsAffx.18718.1.S1_at11/1111+3561605..3564742Leucine Rich Repeat family protein
LOC_Os11g07170OsAffx.7030.1.S1_x_at11/1111+3576994..3580062Leucine Rich Repeat family protein, expressed
LOC_Os11g07170OsAffx.7030.1.S1_at11/1111+3576994..3580062Leucine Rich Repeat family protein, expressed
LOC_Os11g07180OsAffx.30856.1.S1_at11/1111+3585204..3588351Leucine Rich Repeat family protein
LOC_Os11g07190OsAffx.7031.1.S1_at11/1111+3589704..3590827hypothetical protein
LOC_Os11g07200OsAffx.29532.1.S1_x_at3/1111+3609848..3610366retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g07210Os.27053.2.S1_s_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed
LOC_Os11g07210Os.27053.3.A1_s_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed
LOC_Os11g07210Os.27053.3.A1_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30856.1.S1_at--162--1291Chr11:3587669..3587693 (25 bp)
AGATGCAATGGAGTACGTCCACCAT
LOC_Os11g07180
OsAffx.30856.1.S1_at--796--6311Chr11:3587748..3587772 (25 bp)
GATGACAGCCTAACAGCACATGTTG
LOC_Os11g07180
OsAffx.30856.1.S1_at--967--2811Chr11:3587797..3587821 (25 bp)
AAGTTGATTGCACTATATCATCTTC
LOC_Os11g07180
OsAffx.30856.1.S1_at--277--9531Chr11:3587817..3587841 (25 bp)
TCTTCCGGTGACTCAATTATTTCAA
LOC_Os11g07180
OsAffx.30856.1.S1_at--662--651Chr11:3587984..3588008 (25 bp)
ATGCAACAGGTGGTGAAGTTTCAAC
LOC_Os11g07180
OsAffx.30856.1.S1_at--168--1191Chr11:3588000..3588024 (25 bp)
AGTTTCAACCTTCGGAGATGTTTAT
LOC_Os11g07180
OsAffx.30856.1.S1_at--185--8011Chr11:3588087..3588111 (25 bp)
GGATGGTCTGAACATTGCAACATTT
LOC_Os11g07180
OsAffx.30856.1.S1_at--79--3591Chr11:3588107..3588131 (25 bp)
CATTTGTCGATATGAACTTTCCTGA
LOC_Os11g07180
OsAffx.30856.1.S1_at--358--5231Chr11:3588166..3588190 (25 bp)
GAATACCAGAATGGTCTATCCCATG
LOC_Os11g07180
OsAffx.30856.1.S1_at--1066--10131Chr11:3588182..3588206 (25 bp)
TATCCCATGACACTCTTGTGGACAT
LOC_Os11g07180
OsAffx.30856.1.S1_at--523--831Chr11:3588220..3588244 (25 bp)
ATGGAGTGTCTACGTTCTGTGTTAA
LOC_Os11g07180
Target Sequence 
AGATGCAATGGAGTACGTCCACCATAACAACCAAGGAACTATTGTTCATTGTGATCTCAAGCCTAGCAACATTCTTTTAG
ATGACAGCCTAACAGCACATGTTGGAGACTTTGGCCTTGCAAGGTTTAAAGTTGATTGCACTATATCATCTTCCGGTGAC
TCAATTATTTCAAGTGCAATTAATGGAACTATTGGATATGTTGCTCCAGAGTATGCAACAGGTGGTGAAGTTTCAACCTT
CGGAGATGTTTATAGCTTTGGAATAGTTCTCTTCGAAATATTTTTACGAAAGAGACCAACACACGATATGTTCAAGGATG
GTCTGAACATTGCAACATTTGTCGATATGAACTTTCCTGACAGGATATCAGAAGTTGTTGACCAAGAATTGTTAGAATAC
CAGAATGGTCTATCCCATGACACTCTTGTGGACATGAAGGAAAAAGAAATGGAGTGTCTACGTTCTGTGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis