Browse Element(s) Details


Os.27053.2.S1_s_at

Description gb:CB670299
DB_XREF= gi:29674024
DB_XREF=OSJNEe03E24.f
CLONE=OSJNEe03E24
TID=Os.27053.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27053 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T45645 (A.thaliana) T45645 receptor kinase-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0721011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07180OsAffx.30856.1.S1_at11/1111+3585204..3588351Leucine Rich Repeat family protein
LOC_Os11g07190OsAffx.7031.1.S1_at11/1111+3589704..3590827hypothetical protein
LOC_Os11g07200OsAffx.29532.1.S1_x_at3/1111+3609848..3610366retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g07210Os.27053.2.S1_s_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed
LOC_Os11g07210Os.27053.3.A1_s_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed
LOC_Os11g07210Os.27053.3.A1_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed
LOC_Os11g07220NANA11+3616881..3619029hypothetical protein
LOC_Os11g07230Os.11618.1.S1_at11/1111+3629205..3634547Leucine Rich Repeat family protein, expressed
LOC_Os11g07230Os.11618.2.S1_at8/1111+3629205..3634547Leucine Rich Repeat family protein, expressed
LOC_Os11g07240OsAffx.30858.1.S1_at11/1111+3636770..3639905Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27053.2.S1_s_at--567--2571Chr11:3613086..3613110 (25 bp)
AACTGGACAGTTTCTCTTGGTCCTT
LOC_Os11g07210
Os.27053.2.S1_s_at--406--3611Chr11:3613101..3613125 (25 bp)
CTTGGTCCTTATGGCATGCAGTGTA
LOC_Os11g07210
Os.27053.2.S1_s_at--316--7451Chr11:3613121..3613145 (25 bp)
GTGTAATCCAAATCGTGTGCCAATC
LOC_Os11g07210
Os.27053.2.S1_s_at--99--531Chr11:3613166..3613190 (25 bp)
ATCGACTTTCGCTGCTTGATTTCAA
LOC_Os11g07210
Os.27053.2.S1_s_at--130--6371Chr11:3613207..3613231 (25 bp)
GATCCACAGCAAGCATTAGTGTCCT
LOC_Os11g07210
Os.27053.2.S1_s_at--30--5291Chr11:3613281..3613305 (25 bp)
GAAGGCCCCAAACCATGTTGTTGCA
LOC_Os11g07210
Os.27053.2.S1_s_at--1080--3011Chr11:3613393..3613417 (25 bp)
AATGCTTTCACTGGACAGATCCCTG
LOC_Os11g07210
Os.27053.2.S1_s_at--854--3591Chr11:3613455..3613479 (25 bp)
CTTGGCCAGTAACACCTTACAGGGA
LOC_Os11g07210
Os.27053.2.S1_s_at--979--3131Chr11:3613498..3613522 (25 bp)
AATTATTCTGATCTCATGGTGCTAG
LOC_Os11g07210
Os.27053.2.S1_s_at--1152--3111Chr11:3613550..3613574 (25 bp)
AATTTCCTGCAGATTTACCTCATAG
LOC_Os11g07210
Os.27053.2.S1_s_at--173--10171Chr11:3613605..3613629 (25 bp)
TATCATGGGAACCATACCTGCTTCT
LOC_Os11g07210
Target Sequence 
AACTGGACAGTTTCTCTTGGTCCTTATGGCATGCAGTGTAATCCAAATCGTGTGCCAATCGTTACATGGAAATGAGACAG
ATCGACTTTCGCTGCTTGATTTCAAGAATGCAATCATTTTGGATCCACAGCAAGCATTAGTGTCCTGGAATGACAGCAAT
CAAGTATGCAGTTGGGAAGGTGTCTTTTGTAGGGTGAAGGCCCCAAACCATGTTGTTGCACTTAACCTTACAAATCGAGA
CCTAGTAGGGACAATATCCCCTTCACTTGGAAACCTAACATTCCTCAAACATCTAAACCTAACAGGAAATGCTTTCACTG
GACAGATCCCTGCATCCCTTGCCCACTTGCACCGTCTCCAAACCCTCTCCTTGGCCAGTAACACCTTACAGGGAAGGATA
CCAAACCTTGCAAATTATTCTGATCTCATGGTGCTAGATCTGTATAGAAACAATCTAGCTGGGAAATTTCCTGCAGATTT
ACCTCATAGCCTAGAAAAGCTGAGACTTTCATTTAATAATATCATGGGAACCATACCTGCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27053.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis