Browse Element(s) Details


OsAffx.7102.1.S1_at

Description tigr:9639.m01240
TID=OsAffx.7102.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g134909/11expressed protein
LOC_Os12g365201/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13440OsAffx.18827.1.S1_at11/1111+7360559..7363322NB-ARC domain containing protein
LOC_Os11g13459OsAffx.20387.1.S1_x_at3/1111+7369479..7375466retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g13480NANA11+7377327..7379480hypothetical protein
LOC_Os11g13490Os.54455.1.S1_at11/1111+7387208..7390835expressed protein
LOC_Os11g13490OsAffx.7102.1.S1_at9/1111+7387208..7390835expressed protein
LOC_Os11g13500OsAffx.19701.1.S1_s_at2/1111+7393148..7395706hypothetical protein
LOC_Os11g13500OsAffx.19701.1.S1_at1/1111+7393148..7395706hypothetical protein
LOC_Os11g13510OsAffx.18829.1.S1_at11/1111+7400305..7403674NB-ARC domain containing protein
LOC_Os11g13520OsAffx.30952.1.S1_at11/1111+7405681..7408698hypothetical protein
LOC_Os11g13530OsAffx.30954.1.S1_at11/1111+7415097..7416470Serpin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7102.1.S1_at--35--11Chr11:7390728..7390752 (25 bp)
TTACGAAGTAGTCAAATGCTTATTG
LOC_Os11g13490
OsAffx.7102.1.S1_at--371--7091Chr11:7390718..7390742 (25 bp)
GTCAAATGCTTATTGTTAGCTCAAG
LOC_Os11g13490
OsAffx.7102.1.S1_at--1146--4871Chr11:7390711..7390735 (25 bp)
GCTTATTGTTAGCTCAAGCCCACTT
LOC_Os11g13490
OsAffx.7102.1.S1_at--445--51Chr11:7390707..7390731 (25 bp)
ATTGTTAGCTCAAGCCCACTTTATC
LOC_Os11g13490
OsAffx.7102.1.S1_at--896--10451Chr11:7390703..7390727 (25 bp)
TTAGCTCAAGCCCACTTTATCTACA
LOC_Os11g13490
OsAffx.7102.1.S1_at--888--4832Chr12:22330561..22330585 (25 bp)
GCTCAAGCCCACTTTATCTACAATG
LOC_Os12g36520
OsAffx.7102.1.S1_at--983--9711Chr11:7390698..7390722 (25 bp)
TCAAGCCCACTTTATCTACAATGAT
LOC_Os11g13490
OsAffx.7102.1.S1_at--1126--2991Chr11:7390679..7390703 (25 bp)
AATGATGATCATTGGGTCCTTTTTT
LOC_Os11g13490
OsAffx.7102.1.S1_at--849--7792Chr11:7390665..7390689 (25 bp)
GGTCCTTTTTTTTAATGATGAAGCA
LOC_Os11g13490
OsAffx.7102.1.S1_at--186--4211NONE
CCCCACAGTTTATCGACGGCGATGG
NONE
OsAffx.7102.1.S1_at--561--3311NONE
CACAGTTTATCGACGGCGATGGCGG
NONE
Target Sequence 
TTACGAAGTAGTCAAATGCTTATTGTTAGCTCAAGCCCACTTTATCTACAATGATGATCATTGGGTCCTTTTTTTTAATG
ATGAAGCAGGACAAGAGACATTGAAGTCACCCCAACAGAGCAATGCCACCTTCCTTTTTACCGTTAGATCAATGACTTCA
TTACCCCCACAGTTTATCGACGGCGATGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis