Browse Element(s) Details


OsAffx.7125.1.S1_at

Description tigr:9639.m01519
TID=OsAffx.7125.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1676011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16690NANA11+9234697..9234958hypothetical protein
LOC_Os11g16700OsAffx.31005.1.S1_at11/1111+9236816..9237347hypothetical protein
LOC_Os11g16700OsAffx.31005.1.S1_x_at11/1111+9236816..9237347hypothetical protein
LOC_Os11g16710OsAffx.15695.1.S1_x_at9/1111+9238521..9239294hypothetical protein
LOC_Os11g16720OsAffx.31004.1.S1_at11/1111+9242237..9243024hypothetical protein
LOC_Os11g16730OsAffx.30486.1.S1_at1/1111+9244543..9250084transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16740NANA11+9252986..9253294transposon protein, putative, unclassified
LOC_Os11g16750NANA11+9254052..9256399transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16760OsAffx.7125.1.S1_at11/1111+9258535..9259433hypothetical protein
LOC_Os11g16770OsAffx.18883.1.S1_at11/1111+9274678..9279976ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os11g16780OsAffx.18882.1.S1_at11/1111+9280427..9283006hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7125.1.S1_at--606--8911Chr11:9259375..9259399 (25 bp)
TGACCAATCACCTCTTCGCCGTGGA
LOC_Os11g16760
OsAffx.7125.1.S1_at--463--3191Chr11:9259371..9259395 (25 bp)
CAATCACCTCTTCGCCGTGGAATTC
LOC_Os11g16760
OsAffx.7125.1.S1_at--613--1731Chr11:9259343..9259367 (25 bp)
ACCATCCTCAACTTGAAGTTCAACG
LOC_Os11g16760
OsAffx.7125.1.S1_at--994--2791Chr11:9259328..9259352 (25 bp)
AAGTTCAACGACATAAGCGGCACCT
LOC_Os11g16760
OsAffx.7125.1.S1_at--585--10511Chr11:9259325..9259349 (25 bp)
TTCAACGACATAAGCGGCACCTTGT
LOC_Os11g16760
OsAffx.7125.1.S1_at--771--5671Chr11:9259319..9259343 (25 bp)
GACATAAGCGGCACCTTGTCTGCGG
LOC_Os11g16760
OsAffx.7125.1.S1_at--763--351Chr11:9259316..9259340 (25 bp)
ATAAGCGGCACCTTGTCTGCGGGAG
LOC_Os11g16760
OsAffx.7125.1.S1_at--10--3411Chr11:9259217..9259241 (25 bp)
CAGCTTGGCGGCAGCATGTGGCATC
LOC_Os11g16760
OsAffx.7125.1.S1_at--465--4691Chr11:9259210..9259234 (25 bp)
GCGGCAGCATGTGGCATCGGCAGGG
LOC_Os11g16760
OsAffx.7125.1.S1_at--506--9771Chr11:9258568..9258588 (21 bp)
TAATGGTAAAATATGCATCAGCGGC
LOC_Os11g16760
OsAffx.7125.1.S1_at--1149--8571Chr11:9258565..9258588 (24 bp)
TGGTAAAATATGCATCAGCGGCATC
LOC_Os11g16760
Target Sequence 
TGACCAATCACCTCTTCGCCGTGGAATTCGACACCATCCTCAACTTGAAGTTCAACGACATAAGCGGCACCTTGTCTGCG
GGAGGCGGCAGGCATGCAGAGCTGCAGAAGGGCGCCGGGAAGAAAGCGTGCAGCTGCGGCAGCTCAGAGCGGCAAGGGCA
GCTTGGCGGCAGCATGTGGCATCGGCAGGGTGGCATAATTAGCATAACTAATGGTAAAATATGCATCAGCGGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis