Browse Element(s) Details


OsAffx.31005.1.S1_at

Description tigr:9639.m01524
TID=OsAffx.31005.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1670011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16650OsAffx.18885.1.S1_at11/1111+9212106..9212770hypothetical protein
LOC_Os11g16660OsAffx.31008.1.S1_at9/1111+9213526..9215807hypothetical protein
LOC_Os11g16670OsAffx.18884.1.S1_at11/1111+9219354..9220795hypothetical protein
LOC_Os11g16680OsAffx.31007.1.S1_at11/1111+9222301..9226200Transferase family protein, expressed
LOC_Os11g16690NANA11+9234697..9234958hypothetical protein
LOC_Os11g16700OsAffx.31005.1.S1_at11/1111+9236816..9237347hypothetical protein
LOC_Os11g16700OsAffx.31005.1.S1_x_at11/1111+9236816..9237347hypothetical protein
LOC_Os11g16710OsAffx.15695.1.S1_x_at9/1111+9238521..9239294hypothetical protein
LOC_Os11g16720OsAffx.31004.1.S1_at11/1111+9242237..9243024hypothetical protein
LOC_Os11g16730OsAffx.30486.1.S1_at1/1111+9244543..9250084transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16740NANA11+9252986..9253294transposon protein, putative, unclassified
LOC_Os11g16750NANA11+9254052..9256399transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16760OsAffx.7125.1.S1_at11/1111+9258535..9259433hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31005.1.S1_at--291--2211Chr11:9237252..9237276 (25 bp)
ACAAGCCTACTACATTATGAAAGAC
LOC_Os11g16700
OsAffx.31005.1.S1_at--350--4371Chr11:9237248..9237272 (25 bp)
GCCTACTACATTATGAAAGACCGGG
LOC_Os11g16700
OsAffx.31005.1.S1_at--713--9891Chr11:9237245..9237269 (25 bp)
TACTACATTATGAAAGACCGGGTGT
LOC_Os11g16700
OsAffx.31005.1.S1_at--71--1032Chr08:11384162..11384185 (24 bp)
AGGTATGGACACTGACTTTCGTGCC
NONE
OsAffx.31005.1.S1_at--460--7851Chr11:9237176..9237200 (25 bp)
GGTATGGACACTGACTTTCGTGCCA
LOC_Os11g16700
OsAffx.31005.1.S1_at--985--6911Chr11:9237175..9237199 (25 bp)
GTATGGACACTGACTTTCGTGCCAT
LOC_Os11g16700
OsAffx.31005.1.S1_at--880--832Chr08:11384166..11384245 (25 bp)
ATGGACACTGACTTTCGTGCCATTT
NONE
OsAffx.31005.1.S1_at--1119--8512Chr08:11384167..11384246 (25 bp)
TGGACACTGACTTTCGTGCCATTTG
NONE
OsAffx.31005.1.S1_at--642--5611Chr11:9237170..9237194 (25 bp)
GACACTGACTTTCGTGCCATTTGGA
LOC_Os11g16700
OsAffx.31005.1.S1_at--864--2171Chr11:9237169..9237193 (25 bp)
ACACTGACTTTCGTGCCATTTGGAA
LOC_Os11g16700
OsAffx.31005.1.S1_at--674--3331Chr11:9237168..9237192 (25 bp)
CACTGACTTTCGTGCCATTTGGAAA
LOC_Os11g16700
Target Sequence 
ACAAGCCTACTACATTATGAAAGACCGGGTGTTTGCTCACACGCGGGCATATGATCCGGAGCTATTAAAAAAGATAGGTA
TGGACACTGACTTTCGTGCCATTTGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31005.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis