Browse Element(s) Details


OsAffx.31008.1.S1_at

Description tigr:9639.m01528
TID=OsAffx.31008.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g166609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16610NANA11+9185974..9190784retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g16619NANA11+9192653..9192997NA
LOC_Os11g16630OsAffx.31009.1.S1_at11/1111+9201076..9204655hypothetical protein
LOC_Os11g16630OsAffx.23366.2.S1_s_at1/1111+9201076..9204655hypothetical protein
LOC_Os11g16640Os.46314.3.S1_at1/1111+9206257..9209266transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16650OsAffx.18885.1.S1_at11/1111+9212106..9212770hypothetical protein
LOC_Os11g16660OsAffx.31008.1.S1_at9/1111+9213526..9215807hypothetical protein
LOC_Os11g16670OsAffx.18884.1.S1_at11/1111+9219354..9220795hypothetical protein
LOC_Os11g16680OsAffx.31007.1.S1_at11/1111+9222301..9226200Transferase family protein, expressed
LOC_Os11g16690NANA11+9234697..9234958hypothetical protein
LOC_Os11g16700OsAffx.31005.1.S1_at11/1111+9236816..9237347hypothetical protein
LOC_Os11g16700OsAffx.31005.1.S1_x_at11/1111+9236816..9237347hypothetical protein
LOC_Os11g16710OsAffx.15695.1.S1_x_at9/1111+9238521..9239294hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31008.1.S1_at--1130--7271Chr11:9213588..9213612 (25 bp)
GTGTAGTCGTCGTGCAGTTGCCGGT
LOC_Os11g16660
OsAffx.31008.1.S1_at--969--6831Chr11:9213649..9213826 (25 bp)
GTTTCCGGTGGAGCGCTGTTGCAGG
LOC_Os11g16660
OsAffx.31008.1.S1_at--889--1151NONE
AGTCTCTTGTTTACGCCCAACATCT
NONE
OsAffx.31008.1.S1_at--840--10791NONE
TTGTTTACGCCCAACATCTCTCTGT
NONE
OsAffx.31008.1.S1_at--718--451Chr11:9215559..9215583 (25 bp)
ATCTCTCTGTCTAACCCTAGTGAAA
LOC_Os11g16660
OsAffx.31008.1.S1_at--334--11Chr11:9215569..9215593 (25 bp)
CTAACCCTAGTGAAAGAATGAACGT
LOC_Os11g16660
OsAffx.31008.1.S1_at--343--1771Chr11:9215685..9215709 (25 bp)
ACCTGTGCACGGTTATTGTCGGCAG
LOC_Os11g16660
OsAffx.31008.1.S1_at--567--10231Chr11:9215698..9215722 (25 bp)
TATTGTCGGCAGTGCGTAGGTCATG
LOC_Os11g16660
OsAffx.31008.1.S1_at--698--10071Chr11:9215714..9215738 (25 bp)
TAGGTCATGGGTGCTCGTTGGTTCA
LOC_Os11g16660
OsAffx.31008.1.S1_at--431--811Chr11:9215720..9215744 (25 bp)
ATGGGTGCTCGTTGGTTCAAAGATC
LOC_Os11g16660
OsAffx.31008.1.S1_at--672--7891Chr11:9215733..9215757 (25 bp)
GGTTCAAAGATCAGAATCGATGCTA
LOC_Os11g16660
Target Sequence 
GTGTAGTCGTCGTGCAGTTGCCGGTGGAGTTCGTCGGGCCGGCTCCGGCAAGGAGACGGCGGTTTCCGGTGGAGCGCTGT
TGCAGGTGGAGTTAAGAGGAAGAAATTGCAAGGATAGCGGGAGTCTCTTGTTTACGCCCAACATCTCTCTGTCTAACCCT
AGTGAAAGAATGAACGTGGAGCAGGGGCGTGGCAGGCAGTGTGCACGGCTGCGATTGGCGGGCGCGGAGCGGTCGGCCGA
CCGGCGGGGCGGCACCCTCAACTCCCTCACCTGTGCACGGTTATTGTCGGCAGTGCGTAGGTCATGGGTGCTCGTTGGTT
CAAAGATCAGAATCGATGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis