Browse Element(s) Details


OsAffx.18884.1.S1_at

Description tigr:9639.m01527
TID=OsAffx.18884.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1667011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16630OsAffx.31009.1.S1_at11/1111+9201076..9204655hypothetical protein
LOC_Os11g16630OsAffx.23366.2.S1_s_at1/1111+9201076..9204655hypothetical protein
LOC_Os11g16640Os.46314.3.S1_at1/1111+9206257..9209266transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16650OsAffx.18885.1.S1_at11/1111+9212106..9212770hypothetical protein
LOC_Os11g16660OsAffx.31008.1.S1_at9/1111+9213526..9215807hypothetical protein
LOC_Os11g16670OsAffx.18884.1.S1_at11/1111+9219354..9220795hypothetical protein
LOC_Os11g16680OsAffx.31007.1.S1_at11/1111+9222301..9226200Transferase family protein, expressed
LOC_Os11g16690NANA11+9234697..9234958hypothetical protein
LOC_Os11g16700OsAffx.31005.1.S1_at11/1111+9236816..9237347hypothetical protein
LOC_Os11g16700OsAffx.31005.1.S1_x_at11/1111+9236816..9237347hypothetical protein
LOC_Os11g16710OsAffx.15695.1.S1_x_at9/1111+9238521..9239294hypothetical protein
LOC_Os11g16720OsAffx.31004.1.S1_at11/1111+9242237..9243024hypothetical protein
LOC_Os11g16730OsAffx.30486.1.S1_at1/1111+9244543..9250084transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18884.1.S1_at--41--931Chr11:9220735..9220759 (25 bp)
AGGCAGGACGGATCTTACAGGCGCC
LOC_Os11g16670
OsAffx.18884.1.S1_at--485--3711Chr11:9220684..9220708 (25 bp)
CTAACTCGCGCGTGCAGTGTGTGCA
LOC_Os11g16670
OsAffx.18884.1.S1_at--885--8471Chr11:9220647..9220671 (25 bp)
TGGCTCGTGAGGCAGCACCGTACTA
LOC_Os11g16670
OsAffx.18884.1.S1_at--648--1771Chr11:9220631..9220655 (25 bp)
ACCGTACTACGGATCGTCAGAGAAA
LOC_Os11g16670
OsAffx.18884.1.S1_at--244--2571Chr11:9220456..9220632 (25 bp)
AACGGCGATACGGAATGATTCTCAT
LOC_Os11g16670
OsAffx.18884.1.S1_at--984--631Chr11:9220327..9220348 (22 bp)
ATGCAGATGGTCCACTTAACAGTGT
LOC_Os11g16670
OsAffx.18884.1.S1_at--29--9831Chr11:9219727..9219747 (21 bp)
TAACAGTGTTTTTCTTTCCTGCCTG
LOC_Os11g16670
OsAffx.18884.1.S1_at--1078--511Chr11:9219683..9219707 (25 bp)
ATCGATGCAAAAACTCCAGCGGTGA
LOC_Os11g16670
OsAffx.18884.1.S1_at--1033--211Chr11:9219520..9219544 (25 bp)
ATTTGGTGATAGTTGACGCCGATTC
LOC_Os11g16670
OsAffx.18884.1.S1_at--870--9631Chr11:9219477..9219501 (25 bp)
TCAGGAGGAGCAACACCATGCCGGG
LOC_Os11g16670
OsAffx.18884.1.S1_at--689--7571Chr11:9219453..9219477 (25 bp)
GGGCTTACAGCTGCCTACTAAGTGT
LOC_Os11g16670
Target Sequence 
AGGCAGGACGGATCTTACAGGCGCCCCGCTCCCTTGTTCGACGGCGGCGCCCTAACTCGCGCGTGCAGTGTGTGCACGGC
CGCGCGCGTGGCTCGTGAGGCAGCACCGTACTACGGATCGTCAGAGAAACGGCGATACGGAATGATTCTCATGTATGGGG
TCATTTTAAATTGTAGACGGACCATGCAGATGGTCCACTTAACAGTGTTTTTCTTTCCTGCCTGCGTCGCACTGGACCGC
CACATCGATGCAAAAACTCCAGCGGTGACCGCCGCAGACGGAGGGAGCTCGCTGTCGAGGGTGGATTCGACCCGATACGG
CGCGAGGCCGCTGAGGAGGGCCGTCGTCCGGCTGCTGGAGGACACCCTCGCGGAGAGGATGTTTGCCAGAGAGGTCGGGG
AAGGGGATTTGGTGATAGTTGACGCCGATTCAGCTGGGAAATGCCGTGGTCAGGAGGAGCAACACCATGCCGGGGGCTTA
CAGCTGCCTACTAAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis