Browse Element(s) Details


OsAffx.18885.1.S1_at

Description tigr:9639.m01529
TID=OsAffx.18885.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1665011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16610NANA11+9185974..9190784retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g16619NANA11+9192653..9192997NA
LOC_Os11g16630OsAffx.31009.1.S1_at11/1111+9201076..9204655hypothetical protein
LOC_Os11g16630OsAffx.23366.2.S1_s_at1/1111+9201076..9204655hypothetical protein
LOC_Os11g16640Os.46314.3.S1_at1/1111+9206257..9209266transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16650OsAffx.18885.1.S1_at11/1111+9212106..9212770hypothetical protein
LOC_Os11g16660OsAffx.31008.1.S1_at9/1111+9213526..9215807hypothetical protein
LOC_Os11g16670OsAffx.18884.1.S1_at11/1111+9219354..9220795hypothetical protein
LOC_Os11g16680OsAffx.31007.1.S1_at11/1111+9222301..9226200Transferase family protein, expressed
LOC_Os11g16690NANA11+9234697..9234958hypothetical protein
LOC_Os11g16700OsAffx.31005.1.S1_at11/1111+9236816..9237347hypothetical protein
LOC_Os11g16700OsAffx.31005.1.S1_x_at11/1111+9236816..9237347hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18885.1.S1_at--337--5471Chr11:9212212..9212349 (25 bp)
GAACTTTCCGGCCTTTCTATGAGTT
LOC_Os11g16650
OsAffx.18885.1.S1_at--678--4451Chr11:9212335..9212359 (25 bp)
GCCTTTCTATGAGTTGCGTTCGACA
LOC_Os11g16650
OsAffx.18885.1.S1_at--443--1051Chr11:9212541..9212565 (25 bp)
AGGTGTCGGCGATGAATCTGCTACG
LOC_Os11g16650
OsAffx.18885.1.S1_at--1060--6311Chr11:9212551..9212575 (25 bp)
GATGAATCTGCTACGAAGCGTTGTA
LOC_Os11g16650
OsAffx.18885.1.S1_at--864--6871Chr11:9212573..9212597 (25 bp)
GTATCTAGAAGTTGTGACCGGCGTT
LOC_Os11g16650
OsAffx.18885.1.S1_at--152--7351Chr11:9212586..9212610 (25 bp)
GTGACCGGCGTTTGTTTGGACATGA
LOC_Os11g16650
OsAffx.18885.1.S1_at--1152--3431Chr11:9212618..9212642 (25 bp)
CAGTCATTGCAATTGTCAGGGTCCA
LOC_Os11g16650
OsAffx.18885.1.S1_at--1102--9631Chr11:9212633..9212657 (25 bp)
TCAGGGTCCAATTCGTGGCGCATTG
LOC_Os11g16650
OsAffx.18885.1.S1_at--414--5511Chr11:9212671..9212695 (25 bp)
GAAAAGCTTGGTGACTTCCATCACT
LOC_Os11g16650
OsAffx.18885.1.S1_at--551--5691Chr11:9212683..9212707 (25 bp)
GACTTCCATCACTGTAGTGTCAGAC
LOC_Os11g16650
OsAffx.18885.1.S1_at--248--8711Chr11:9212713..9212737 (25 bp)
TGTCAGGGATGCACGTGAACGTCAC
LOC_Os11g16650
Target Sequence 
GAACTTTCCGGCCTTTCTATGAGTTGCGTTCGACAGGGAGACGGCTAGACGTAGCGCTCGGGTCGTTCAGTGGCTGTGAA
GGCGGTATGGCGATTTGTCGGCTTCGGCTCGCGGCTAGATTGACGGGTGGTCAATCGGATGTCGGAGCGGTTTGTGGGCT
CGAAGTGGAGCAGCAATGGTGGTGGGAGCCACAGGTGGACCTTGGGGCTGATAGAAAGGTGTCGGCGATGAATCTGCTAC
GAAGCGTTGTATCTAGAAGTTGTGACCGGCGTTTGTTTGGACATGATAGGAGGCAGTCATTGCAATTGTCAGGGTCCAAT
TCGTGGCGCATTGGAGGACGTGATCTGAAAAGCTTGGTGACTTCCATCACTGTAGTGTCAGACGGAGGTGTCAGGGATGC
ACGTGAACGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis