Browse Element(s) Details


OsAffx.31007.1.S1_at

Description tigr:9639.m01526
TID=OsAffx.31007.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative hsr201 hypersensitivity-related protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1668011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16630OsAffx.31009.1.S1_at11/1111+9201076..9204655hypothetical protein
LOC_Os11g16630OsAffx.23366.2.S1_s_at1/1111+9201076..9204655hypothetical protein
LOC_Os11g16640Os.46314.3.S1_at1/1111+9206257..9209266transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16650OsAffx.18885.1.S1_at11/1111+9212106..9212770hypothetical protein
LOC_Os11g16660OsAffx.31008.1.S1_at9/1111+9213526..9215807hypothetical protein
LOC_Os11g16670OsAffx.18884.1.S1_at11/1111+9219354..9220795hypothetical protein
LOC_Os11g16680OsAffx.31007.1.S1_at11/1111+9222301..9226200Transferase family protein, expressed
LOC_Os11g16690NANA11+9234697..9234958hypothetical protein
LOC_Os11g16700OsAffx.31005.1.S1_at11/1111+9236816..9237347hypothetical protein
LOC_Os11g16700OsAffx.31005.1.S1_x_at11/1111+9236816..9237347hypothetical protein
LOC_Os11g16710OsAffx.15695.1.S1_x_at9/1111+9238521..9239294hypothetical protein
LOC_Os11g16720OsAffx.31004.1.S1_at11/1111+9242237..9243024hypothetical protein
LOC_Os11g16730OsAffx.30486.1.S1_at1/1111+9244543..9250084transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31007.1.S1_at--139--10211Chr11:9222810..9222834 (25 bp)
TATTCTCCTGGACAACTTGTGCGTT
LOC_Os11g16680
OsAffx.31007.1.S1_at--402--8691Chr11:9222793..9222817 (25 bp)
TGTGCGTTTCATGTTCACTTTAAAT
LOC_Os11g16680
OsAffx.31007.1.S1_at--345--7891Chr11:9222729..9222753 (25 bp)
GGTTACTATGGTTGTGGTCTCGTCC
LOC_Os11g16680
OsAffx.31007.1.S1_at--809--2511Chr11:9222691..9222715 (25 bp)
AACATTGGTTGCTGACTTGTGCGGA
LOC_Os11g16680
OsAffx.31007.1.S1_at--551--4691Chr11:9222671..9222695 (25 bp)
GCGGAAATCCTCTTGAGTATGCAGT
LOC_Os11g16680
OsAffx.31007.1.S1_at--883--1191Chr11:9222656..9222680 (25 bp)
AGTATGCAGTTCAGCTCGTGCGCAA
LOC_Os11g16680
OsAffx.31007.1.S1_at--945--6071Chr11:9222609..9222633 (25 bp)
GAGTACATCAAATCAACCGTGGACA
LOC_Os11g16680
OsAffx.31007.1.S1_at--254--2111Chr11:9222587..9222611 (25 bp)
ACATGATAGCTTCCCGTAAGTGGCC
LOC_Os11g16680
OsAffx.31007.1.S1_at--931--7051Chr11:9222572..9222596 (25 bp)
GTAAGTGGCCATCGCTTGTTGTAGA
LOC_Os11g16680
OsAffx.31007.1.S1_at--182--6631Chr11:9222387..9222411 (25 bp)
GTTGTGGTGCCGATGTACTTGCCAA
LOC_Os11g16680
OsAffx.31007.1.S1_at--1039--1911Chr11:9222339..9222363 (25 bp)
ACGGAGATCTCGGTTTGGTCAAGGA
LOC_Os11g16680
Target Sequence 
TATTCTCCTGGACAACTTGTGCGTTTCATGTTCACTTTAAATTCTCGTGGCAAGTGGAAACGCAACCCACCAGTCCCTCA
AGGTTACTATGGTTGTGGTCTCGTCCTTCCTGTTGCAGAAACATTGGTTGCTGACTTGTGCGGAAATCCTCTTGAGTATG
CAGTTCAGCTCGTGCGCAAGGCTAAGTTTAATGTGACTGATGAGTACATCAAATCAACCGTGGACATGATAGCTTCCCGT
AAGTGGCCATCGCTTGTTGTAGATCGAACATATGTTGTGTCTGATATAACAACCATTGGAGAGGACAAGATAGACTTTGG
GTGGGGGAAGCGAGTTGGGGGTGGCATACCAATGGCAGGAGACATCATGTCCAAGCTATTAAGCTATTTTATGAAGTGCA
AGAATGCTGATGGTGAAGATTGTGTTGTGGTGCCGATGTACTTGCCAAGCATAATAATGGATAGGTTTGCAACGGAGATC
TCGGTTTGGTCAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis