Browse Element(s) Details


OsAffx.7216.2.S1_at

Description tigr:9639.m02430
TID=OsAffx.7216.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g271409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g27100NANA11+15094103..15096252retrotransposon, putative, centromere-specific
LOC_Os11g27110NANA11+15098616..15099968expressed protein
LOC_Os11g27120OsAffx.7215.1.S1_at11/1111+15100933..15101315hypothetical protein
LOC_Os11g27130OsAffx.31156.1.S1_at11/1111+15110974..15111707hypothetical protein
LOC_Os11g27140OsAffx.7216.2.S1_at9/1111+15116343..15117330hypothetical protein
LOC_Os11g27150NANA11+15119105..15122666transposon protein, putative, unclassified
LOC_Os11g27160NANA11+15123878..15125365retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g27170OsAffx.19036.1.S1_at11/1111+15137375..15143539retrotransposon protein, putative, unclassified
LOC_Os11g27170OsAffx.29729.1.S1_at1/1111+15137375..15143539retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7216.2.S1_at--996--392Chr11:15116398..15116422 (25 bp)
ATCTGGTACTAGAAGACTACCCTTC
LOC_Os11g27140
OsAffx.7216.2.S1_at--444--10611Chr11:15116420..15116444 (25 bp)
TTCGGGTGGACGTATAAGTCGTACT
LOC_Os11g27140
OsAffx.7216.2.S1_at--404--8111Chr11:15116427..15116451 (25 bp)
GGACGTATAAGTCGTACTCCTTGGT
LOC_Os11g27140
OsAffx.7216.2.S1_at--416--6891Chr11:15116431..15116455 (25 bp)
GTATAAGTCGTACTCCTTGGTCTCT
LOC_Os11g27140
OsAffx.7216.2.S1_at--1129--9731Chr11:15116434..15116458 (25 bp)
TAAGTCGTACTCCTTGGTCTCTTAT
LOC_Os11g27140
OsAffx.7216.2.S1_at--440--7211Chr11:15116437..15116461 (25 bp)
GTCGTACTCCTTGGTCTCTTATTAA
LOC_Os11g27140
OsAffx.7216.2.S1_at--1014--6991Chr11:15116440..15116464 (25 bp)
GTACTCCTTGGTCTCTTATTAAGCT
LOC_Os11g27140
OsAffx.7216.2.S1_at--978--9231Chr11:15116444..15116468 (25 bp)
TCCTTGGTCTCTTATTAAGCTTCCT
LOC_Os11g27140
OsAffx.7216.2.S1_at--42--7811Chr11:15116449..15116473 (25 bp)
GGTCTCTTATTAAGCTTCCTAGAAG
LOC_Os11g27140
OsAffx.7216.2.S1_at--126--7091NONE
GTCAAGCTCACAAATGTTCCCGACA
NONE
OsAffx.7216.2.S1_at--841--2191NONE
ACAAATGTTCCCGACAGCTCGGTAG
NONE
Target Sequence 
ATCTGGTACTAGAAGACTACCCTTCGGGTGGACGTATAAGTCGTACTCCTTGGTCTCTTATTAAGCTTCCTAGAAGATTC
ACCCAAAATCTCCATAGACTGCGACCAACAGTCAAGCTCACAAATGTTCCCGACAGCTCGGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7216.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis