Browse Element(s) Details


OsAffx.19036.1.S1_at

Description tigr:9639.m02433
TID=OsAffx.19036.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY087352 serine carboxypeptidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2717011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g27140OsAffx.7216.2.S1_at9/1111+15116343..15117330hypothetical protein
LOC_Os11g27150NANA11+15119105..15122666transposon protein, putative, unclassified
LOC_Os11g27160NANA11+15123878..15125365retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g27170OsAffx.19036.1.S1_at11/1111+15137375..15143539retrotransposon protein, putative, unclassified
LOC_Os11g27170OsAffx.29729.1.S1_at1/1111+15137375..15143539retrotransposon protein, putative, unclassified
LOC_Os11g27180OsAffx.20387.1.S1_x_at2/1111+15143610..15147606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27190Os.25754.2.S1_x_at2/1111+15148400..15151232retrotransposon protein, putative, unclassified
LOC_Os11g27190OsAffx.31069.2.S1_x_at1/1111+15148400..15151232retrotransposon protein, putative, unclassified
LOC_Os11g27200OsAffx.31157.1.S1_at10/1111+15151727..15156685transposon protein, putative, unclassified
LOC_Os11g27210OsAffx.380.1.S1_at1/1111+15158597..15164720retrotransposon protein, putative, unclassified
LOC_Os11g27210OsAffx.25972.1.S1_at1/1111+15158597..15164720retrotransposon protein, putative, unclassified
LOC_Os11g27220OsAffx.31158.1.S1_at2/1111+15165446..15166625hypothetical protein
LOC_Os11g27240Os.54866.1.S1_at11/1111+15167385..15170454pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19036.1.S1_at--415--4871Chr11:15137455..15137479 (25 bp)
GCTATTCAATGCCAGCGATCCATAT
LOC_Os11g27170
OsAffx.19036.1.S1_at--437--3031Chr11:15137462..15137486 (25 bp)
AATGCCAGCGATCCATATATATCAT
LOC_Os11g27170
OsAffx.19036.1.S1_at--257--6371Chr11:15137471..15137495 (25 bp)
GATCCATATATATCATGTGTGCGCA
LOC_Os11g27170
OsAffx.19036.1.S1_at--551--411Chr11:15137482..15137506 (25 bp)
ATCATGTGTGCGCAATATTACTGTT
LOC_Os11g27170
OsAffx.19036.1.S1_at--336--7471Chr11:15137487..15137511 (25 bp)
GTGTGCGCAATATTACTGTTGCAGA
LOC_Os11g27170
OsAffx.19036.1.S1_at--167--9932Chr11:15137500..15137524 (25 bp)
TACTGTTGCAGATACGTGGAGGTGA
LOC_Os11g27170
OsAffx.19036.1.S1_at--820--5451Chr11:15137523..15137547 (25 bp)
GAACGAGAGTACTAGCGTGCGCCTC
LOC_Os11g27170
OsAffx.19036.1.S1_at--1052--6011Chr11:15137527..15137551 (25 bp)
GAGAGTACTAGCGTGCGCCTCTTCT
LOC_Os11g27170
OsAffx.19036.1.S1_at--537--7471Chr11:15137612..15137636 (25 bp)
GTGGGCCAGGATGTTCTAGTATCTC
LOC_Os11g27170
OsAffx.19036.1.S1_at--731--3191Chr11:15138077..15138101 (25 bp)
CAATGGAAGGGTCCAAGTCTAGTGA
LOC_Os11g27170
OsAffx.19036.1.S1_at--1061--10111Chr11:15139099..15139123 (25 bp)
TATAAAGGGAATAGCGGAACTCAAT
LOC_Os11g27170
Target Sequence 
GCTATTCAATGCCAGCGATCCATATATATCATGTGTGCGCAATATTACTGTTGCAGATACGTGGAGGTGAACGAGAGTAC
TAGCGTGCGCCTCTTCTACTACTTTGTTAAGTCAGAGAAGGATCCTGATGTAGACCCACTTTTATTGTGGCTATCAGGTG
GGCCAGGATGTTCTAGTATCTCTGGCCTAACCCACGAGATAGGGGCAGGGTTCTCATACGCGGCAACAATGGAAGGGTCC
AAGTCTAGTGATACCAAGACAGTGAAACAGCTTTATATTTTCCTCAGAAAGATTATAAAGGGAATAGCGGAACTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis