Browse Element(s) Details


Os.54866.1.S1_at

Description gb:AK106953.1
DB_XREF= gi:32992162
TID=Os.54866.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54866 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-E06, full insert sequence.
FL= gb:AK106953.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2724011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g27170OsAffx.19036.1.S1_at11/1111+15137375..15143539retrotransposon protein, putative, unclassified
LOC_Os11g27170OsAffx.29729.1.S1_at1/1111+15137375..15143539retrotransposon protein, putative, unclassified
LOC_Os11g27180OsAffx.20387.1.S1_x_at2/1111+15143610..15147606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27190Os.25754.2.S1_x_at2/1111+15148400..15151232retrotransposon protein, putative, unclassified
LOC_Os11g27190OsAffx.31069.2.S1_x_at1/1111+15148400..15151232retrotransposon protein, putative, unclassified
LOC_Os11g27200OsAffx.31157.1.S1_at10/1111+15151727..15156685transposon protein, putative, unclassified
LOC_Os11g27210OsAffx.380.1.S1_at1/1111+15158597..15164720retrotransposon protein, putative, unclassified
LOC_Os11g27210OsAffx.25972.1.S1_at1/1111+15158597..15164720retrotransposon protein, putative, unclassified
LOC_Os11g27220OsAffx.31158.1.S1_at2/1111+15165446..15166625hypothetical protein
LOC_Os11g27240Os.54866.1.S1_at11/1111+15167385..15170454pentatricopeptide, putative, expressed
LOC_Os11g27250Os.49957.1.S1_at11/1111+15172412..15179933expressed protein
LOC_Os11g27250OsAffx.31159.1.S1_at10/1111+15172412..15179933expressed protein
LOC_Os11g27250OsAffx.29095.1.S1_at1/1111+15172412..15179933expressed protein
LOC_Os11g27250Os.34903.1.S1_at1/1111+15172412..15179933expressed protein
LOC_Os11g27264Os.10644.1.S1_at10/1111+15182780..15194588Serine carboxypeptidase family protein, expressed
LOC_Os11g27264OsAffx.9287.1.S1_at1/1111+15182780..15194588Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006381biological_processmRNA editing
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54866.1.S1_at--514--10231Chr11:15169857..15169881 (25 bp)
TATTGGACAGAATGCCGGACCGGAA
LOC_Os11g27240
Os.54866.1.S1_at--902--1771Chr11:15169883..15169907 (25 bp)
ACCGTGACGTGTAATGCCATGCTCA
LOC_Os11g27240
Os.54866.1.S1_at--168--9771Chr11:15169894..15169918 (25 bp)
TAATGCCATGCTCACCGGGTATACG
LOC_Os11g27240
Os.54866.1.S1_at--431--5891Chr11:15170138..15170162 (25 bp)
GAGCTGTTCGACAAGATGCCTACGT
LOC_Os11g27240
Os.54866.1.S1_at--922--6711Chr11:15170170..15170194 (25 bp)
GTTCGTGTGGTCATCGATGGTCACT
LOC_Os11g27240
Os.54866.1.S1_at--909--491Chr11:15170182..15170206 (25 bp)
ATCGATGGTCACTGGGTACTTCAAG
LOC_Os11g27240
Os.54866.1.S1_at--901--5411Chr11:15170222..15170246 (25 bp)
GAAGCGCACGCGGTGTTCAACAGAA
LOC_Os11g27240
Os.54866.1.S1_at--641--5231Chr11:15170244..15170268 (25 bp)
GAATACCCGTGCGAAACTTGGTGAA
LOC_Os11g27240
Os.54866.1.S1_at--176--5591Chr11:15170288..15170312 (25 bp)
GAAATGCTTACCATCGGCAGTCCGG
LOC_Os11g27240
Os.54866.1.S1_at--114--2211Chr11:15170349..15170373 (25 bp)
ACAACAGTGTAGGTGCATGGTGCAA
LOC_Os11g27240
Os.54866.1.S1_at--782--9011Chr11:15170369..15170393 (25 bp)
TGCAACGGTTGGTCAGGTGTACTGA
LOC_Os11g27240
Target Sequence 
TATTGGACAGAATGCCGGACCGGAACACCGTGACGTGTAATGCCATGCTCACCGGGTATACGGCGGCGGGCGACATGGCC
AACGCTGAGGCGGTGTTTGCCGGCATGGGCTCACGGACGCCCGTCACGTGGGCGACGCTGATCCGGGGGTTCGCGGAGGA
GCGCGACATGGTGGATGCGCGGCGGTGGTTCGAGGCCGCGCCGCCGGGCATGCGGAACGTCGTCACGTGGACCGTGGCTG
TGCAGGGTTACATGGCCACGGGGGACATGGAGACCGCGAGGGAGCTGTTCGACAAGATGCCTACGTGGAACGCGTTCGTG
TGGTCATCGATGGTCACTGGGTACTTCAAGGCTGGCAATGCCAACGAAGCGCACGCGGTGTTCAACAGAATACCCGTGCG
AAACTTGGTGAATTGGAACACGCTGATAGCGGAAATGCTTACCATCGGCAGTCCGGCCAGAAATAAAAAATCGGACGTCT
TAATCTAAAAGAACAACAGTGTAGGTGCATGGTGCAACGGTTGGTCAGGTGTACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis