Browse Element(s) Details


OsAffx.29095.1.S1_at

Description tigr:9636.m00748
TID=OsAffx.29095.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=double-strand break repair protein mre11. (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0803011/11Double-strand break repair protein MRE11, putative, expressed
LOC_Os11g272501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08000OsAffx.5745.1.S1_x_at11/118+4517322..4525712expressed protein
LOC_Os08g08000Os.9252.1.S1_at10/118+4517322..4525712expressed protein
LOC_Os08g08000Os.51691.1.S2_at10/118+4517322..4525712expressed protein
LOC_Os08g08020OsAffx.29094.1.S1_at11/118+4540627..4543036expressed protein
LOC_Os08g08030OsAffx.29095.1.S1_at11/118+4545166..4551186Double-strand break repair protein MRE11, putative, expressed
LOC_Os08g08040Os.12091.1.S1_at10/118+4556085..4559028U6 snRNA-associated Sm-like protein LSm7, putative, expressed
LOC_Os08g08050Os.47992.1.S1_at1/118+4560471..4563589retrotransposon protein, putative, unclassified
LOC_Os08g08060Os.5348.1.S1_at11/118+4564674..4574398Pep3/Vps18/deep orange family protein, expressed
LOC_Os08g08070Os.10571.1.S1_at11/118+4575088..4577145Glucose transporter, putative, expressed
LOC_Os08g08070OsAffx.7485.1.S1_x_at1/118+4575088..4577145Glucose transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29095.1.S1_at--187--2451Chr08:4546044..4546068 (25 bp)
AAAATGACCTAGACAGTGCACTGCA
LOC_Os08g08030
OsAffx.29095.1.S1_at--924--7332Chr11:15178903..15178926 (24 bp)
GTGCACTGCATGATTTTGTCAACAA
LOC_Os11g27250
OsAffx.29095.1.S1_at--1087--8471Chr08:4545993..4546017 (25 bp)
TGGCGTTTCATTCTTGTCTGGACAA
LOC_Os08g08030
OsAffx.29095.1.S1_at--785--1651Chr08:4545702..4545726 (25 bp)
AGCGCATGAATGAAGATCCCCTCCT
LOC_Os08g08030
OsAffx.29095.1.S1_at--1121--7951Chr08:4545667..4545691 (25 bp)
GGATCAGAAATCATGCCGTGCTCTC
LOC_Os08g08030
OsAffx.29095.1.S1_at--756--9091Chr08:4545649..4545673 (25 bp)
TGCTCTCAGAGCCTGCCAACGAACG
LOC_Os08g08030
OsAffx.29095.1.S1_at--101--4591Chr08:4545625..4545649 (25 bp)
GCGCTCAGCGCGTTTCAGGAATTGA
LOC_Os08g08030
OsAffx.29095.1.S1_at--981--5591Chr08:4545432..4545574 (25 bp)
GAAATTTCTGACAAGGAGCACTCTC
LOC_Os08g08030
OsAffx.29095.1.S1_at--242--7211Chr08:4545378..4545402 (25 bp)
GTCGATGGAGGCTCTCAATCTTCAA
LOC_Os08g08030
OsAffx.29095.1.S1_at--529--3411Chr08:4545344..4545368 (25 bp)
CAGACTTGAGTTCTTTCTACCGTAC
LOC_Os08g08030
OsAffx.29095.1.S1_at--267--6971Chr08:4545323..4545347 (25 bp)
GTACCGCACCGTCGAAGAACAATGA
LOC_Os08g08030
Target Sequence 
AAAATGACCTAGACAGTGCACTGCATGATTTTGTCAACAAGGACGAGAATATGGCGTTTCATTCTTGTCTGGACAAAAAT
ATTGATGCAGCAAAAAAAAAGTTGACGTTTGCAACAAAGGATTTGAAAGCTGAAGAAGATATAGTACTTCAACTGGATCA
GTGTATGCAGGAGCGCATGAATGAAGATCCCCTCCTCTCCAAGGGAGGATCAGAAATCATGCCGTGCTCTCAGAGCCTGC
CAACGAACGCGCTCAGCGCGTTTCAGGAATTGAAGTGCTCATCAAATGAGGAACAAGATACTCATGAATCAGATGAACTT
ATCGAAATTTCTGACAAGGAGCACTCTCAACAAGCAAGCCAGAAGAGGCCAGCTCCTGTCGATGGAGGCTCTCAATCTTC
AAGGAGAAAAACAGACTTGAGTTCTTTCTACCGTACCGCACCGTCGAAGAACAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis