Browse Element(s) Details


Os.10571.1.S1_at

Description gb:AK070877.1
DB_XREF= gi:32980900
TID=Os.10571.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10571 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023008O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065C06, full insert sequence.
FL= gb:AK070877.1 gb:AK072269.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0807011/11Glucose transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08030OsAffx.29095.1.S1_at11/118+4545166..4551186Double-strand break repair protein MRE11, putative, expressed
LOC_Os08g08040Os.12091.1.S1_at10/118+4556085..4559028U6 snRNA-associated Sm-like protein LSm7, putative, expressed
LOC_Os08g08050Os.47992.1.S1_at1/118+4560471..4563589retrotransposon protein, putative, unclassified
LOC_Os08g08060Os.5348.1.S1_at11/118+4564674..4574398Pep3/Vps18/deep orange family protein, expressed
LOC_Os08g08070Os.10571.1.S1_at11/118+4575088..4577145Glucose transporter, putative, expressed
LOC_Os08g08070OsAffx.7485.1.S1_x_at1/118+4575088..4577145Glucose transporter, putative, expressed
LOC_Os08g08080Os.27398.1.S1_at11/118+4580134..4584889LOC564510 protein, putative, expressed
LOC_Os08g08090Os.55321.1.S1_at11/118+4587327..4587829expressed protein
LOC_Os08g08100OsAffx.29096.1.S1_at11/118+4589434..4591178hypothetical protein
LOC_Os08g08110Os.5402.1.S1_at11/118+4593401..4598370diacylglycerol kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015770biological_processsucrose transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10571.1.S1_at--136--1311Chr08:4576607..4576631 (25 bp)
AGATGAACCACGTCTGGAGCCGGCA
LOC_Os08g08070
Os.10571.1.S1_at--625--6171Chr08:4576691..4576715 (25 bp)
GAGGAAACCGCAGAAGCCACAACGT
LOC_Os08g08070
Os.10571.1.S1_at--147--4411Chr08:4576706..4576730 (25 bp)
GCCACAACGTCTAGCTCTTACATAT
LOC_Os08g08070
Os.10571.1.S1_at--102--1571Chr08:4576718..4576742 (25 bp)
AGCTCTTACATATACTATTACCGTT
LOC_Os08g08070
Os.10571.1.S1_at--991--8731Chr08:4576733..4576757 (25 bp)
TATTACCGTTTACGAGTTACGCGAG
LOC_Os08g08070
Os.10571.1.S1_at--805--7031Chr08:4576964..4576988 (25 bp)
GTAAATTCTTTGGAGAGCGCTACAA
LOC_Os08g08070
Os.10571.1.S1_at--962--2251Chr08:4576987..4577011 (25 bp)
AAATATCGCATGGTGTTGCCGCGCA
LOC_Os08g08070
Os.10571.1.S1_at--315--6691Chr08:4577001..4577025 (25 bp)
GTTGCCGCGCATGTAGAGTACTGTT
LOC_Os08g08070
Os.10571.1.S1_at--100--6091Chr08:4577016..4577040 (25 bp)
GAGTACTGTTTCTCTAACCAATAAA
LOC_Os08g08070
Os.10571.1.S1_at--773--2291Chr08:4577088..4577112 (25 bp)
AAATGTTTCGTTACTCTTGAGAAAT
LOC_Os08g08070
Os.10571.1.S1_at--1057--5571Chr08:4577108..4577132 (25 bp)
GAAATGTTTCATCGATCGGGTTAAA
LOC_Os08g08070
Target Sequence 
AGATGAACCACGTCTGGAGCCGGCACTGGTTCTGGGGCAGCTACGTCACCGCCCACGACGTCGCCGGCGCCGGCGCCGGA
GGAGGAGGAAACCGCAGAAGCCACAACGTCTAGCTCTTACATATACTATTACCGTTTACGAGTTACGCGAGAGAGAGAGA
ATTAATGGGTAGGTTGTGTAATTAGGTAATGCAAGAATTAATTAAACCAATTAATTTCAAGGGACAGGTTTTTAATTAAT
TAATTAATTCGGGGAGGGGGGAGCTTTAGAATTTGGTCGGGGCAGGTTAATTTCAGGGTATTTGTTGTATAGATTTTGAA
TTTTATAGGTGTTTTCTTTTTATGAAATTCTTATGTAGTAAATTCTTTGGAGAGCGCTACAAATATCGCATGGTGTTGCC
GCGCATGTAGAGTACTGTTTCTCTAACCAATAAAAAATGTTTCAACAAAAATGTATCAGTTATGTGTATCTTGAAAATAA
AAAATGTTTCGTTACTCTTGAGAAATGTTTCATCGATCGGGTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis