Browse Element(s) Details


Os.27398.1.S1_at

Description gb:AK068383.1
DB_XREF= gi:32978401
TID=Os.27398.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27398 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147K06, full insert sequence.
FL= gb:AK068383.1 gb:AK100262.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0808011/11LOC564510 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08040Os.12091.1.S1_at10/118+4556085..4559028U6 snRNA-associated Sm-like protein LSm7, putative, expressed
LOC_Os08g08050Os.47992.1.S1_at1/118+4560471..4563589retrotransposon protein, putative, unclassified
LOC_Os08g08060Os.5348.1.S1_at11/118+4564674..4574398Pep3/Vps18/deep orange family protein, expressed
LOC_Os08g08070Os.10571.1.S1_at11/118+4575088..4577145Glucose transporter, putative, expressed
LOC_Os08g08070OsAffx.7485.1.S1_x_at1/118+4575088..4577145Glucose transporter, putative, expressed
LOC_Os08g08080Os.27398.1.S1_at11/118+4580134..4584889LOC564510 protein, putative, expressed
LOC_Os08g08090Os.55321.1.S1_at11/118+4587327..4587829expressed protein
LOC_Os08g08100OsAffx.29096.1.S1_at11/118+4589434..4591178hypothetical protein
LOC_Os08g08110Os.5402.1.S1_at11/118+4593401..4598370diacylglycerol kinase, putative, expressed
LOC_Os08g08120Os.49576.1.S1_at11/118+4604159..4606390B-box zinc finger family protein, expressed
LOC_Os08g08120Os.11132.1.S1_s_at11/118+4604159..4606390B-box zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27398.1.S1_at--742--5271Chr08:4583476..4583500 (25 bp)
GAATGATACAGACCTCCTTCTGGAG
LOC_Os08g08080
Os.27398.1.S1_at--1038--231Chr08:4583553..4583577 (25 bp)
ATATACCTAGTCACAGCTGGCTGAA
LOC_Os08g08080
Os.27398.1.S1_at--250--8991Chr08:4583574..4583598 (25 bp)
TGAAGCGTGGTGTAGATCCTCCTCC
LOC_Os08g08080
Os.27398.1.S1_at--645--4951Chr08:4583610..4583634 (25 bp)
GCATAAAGCCTGGTCGTCATTGGGA
LOC_Os08g08080
Os.27398.1.S1_at--872--5131Chr08:4584578..4584602 (25 bp)
GCAACGGAGCAAGAGGCCTACCTTT
LOC_Os08g08080
Os.27398.1.S1_at--114--1311Chr08:4584589..4584613 (25 bp)
AGAGGCCTACCTTTGGTCTGTCGCA
LOC_Os08g08080
Os.27398.1.S1_at--83--7191Chr08:4584604..4584628 (25 bp)
GTCTGTCGCAGATATGTGAGCATAG
LOC_Os08g08080
Os.27398.1.S1_at--1001--7371Chr08:4584619..4584643 (25 bp)
GTGAGCATAGCTGTTCTTCAAAGAA
LOC_Os08g08080
Os.27398.1.S1_at--693--5411Chr08:4584641..4584665 (25 bp)
GAAGCCAAGGTAGCTTGTGTGCCTT
LOC_Os08g08080
Os.27398.1.S1_at--152--3591Chr08:4584793..4584817 (25 bp)
CATTTTTCTCTTTGCCACTCTTAAA
LOC_Os08g08080
Os.27398.1.S1_at--953--6311Chr08:4584834..4584858 (25 bp)
GATGAACATCTTTACTCGGAATTAG
LOC_Os08g08080
Target Sequence 
GAATGATACAGACCTCCTTCTGGAGGACTTGGGAGATGATGAAAAGATGAAAGAATCTGGCTTCATTGTTCCCCAAAATA
TACCTAGTCACAGCTGGCTGAAGCGTGGTGTAGATCCTCCTCCAAACCGCTACGGCATAAAGCCTGGTCGTCATTGGGAC
GGAGTGGATCGCAGCAATGGATTTGAGAAGGATATGTTTAAGCTGAAGAACGAGAAGCAAGCAACGGAGCAAGAGGCCTA
CCTTTGGTCTGTCGCAGATATGTGAGCATAGCTGTTCTTCAAAGAAGCCAAGGTAGCTTGTGTGCCTTGTTAAACGAAGT
AGTATACTGTAAAATGCTTGGAAGGAAGGAAGCACGGCCTCTCGGCGTAGCACAGCGTGCTTGAAAACTCAAATGTAGAA
TCAAACTTGTTGTGCATTGGTTGAAATCTTTTTGGCATTTTTCTCTTTGCCACTCTTAAAAACATTTTGTAACATCGATG
AACATCTTTACTCGGAATTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis