Browse Element(s) Details


OsAffx.29096.1.S1_at

Description tigr:9636.m00757
TID=OsAffx.29096.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0810011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08060Os.5348.1.S1_at11/118+4564674..4574398Pep3/Vps18/deep orange family protein, expressed
LOC_Os08g08070Os.10571.1.S1_at11/118+4575088..4577145Glucose transporter, putative, expressed
LOC_Os08g08070OsAffx.7485.1.S1_x_at1/118+4575088..4577145Glucose transporter, putative, expressed
LOC_Os08g08080Os.27398.1.S1_at11/118+4580134..4584889LOC564510 protein, putative, expressed
LOC_Os08g08090Os.55321.1.S1_at11/118+4587327..4587829expressed protein
LOC_Os08g08100OsAffx.29096.1.S1_at11/118+4589434..4591178hypothetical protein
LOC_Os08g08110Os.5402.1.S1_at11/118+4593401..4598370diacylglycerol kinase, putative, expressed
LOC_Os08g08120Os.49576.1.S1_at11/118+4604159..4606390B-box zinc finger family protein, expressed
LOC_Os08g08120Os.11132.1.S1_s_at11/118+4604159..4606390B-box zinc finger family protein, expressed
LOC_Os08g08130Os.31233.1.S1_at1/118+4611650..4613757transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29096.1.S1_at--725--10371Chr08:4590599..4590623 (25 bp)
TTTTCCGTTGGCAAAAATATTCACG
LOC_Os08g08100
OsAffx.29096.1.S1_at--932--10211Chr08:4590616..4590640 (25 bp)
TATTCACGTCTTTGATCCATGGAGA
LOC_Os08g08100
OsAffx.29096.1.S1_at--1100--3491Chr08:4590706..4590730 (25 bp)
CATGGAAATGGATGTGGCCTCAGGA
LOC_Os08g08100
OsAffx.29096.1.S1_at--160--4451Chr08:4590722..4590746 (25 bp)
GCCTCAGGAGTTTGGGCCCCAGAAG
LOC_Os08g08100
OsAffx.29096.1.S1_at--399--10251Chr08:4590732..4590756 (25 bp)
TTTGGGCCCCAGAAGGAGATGAACA
LOC_Os08g08100
OsAffx.29096.1.S1_at--499--6031Chr08:4590747..4590771 (25 bp)
GAGATGAACATGAACGCCCGCAGCG
LOC_Os08g08100
OsAffx.29096.1.S1_at--914--10131Chr08:4590886..4590910 (25 bp)
TATCCTTCGCGTTCCACGTCGTGGC
LOC_Os08g08100
OsAffx.29096.1.S1_at--811--9791Chr08:4591016..4591040 (25 bp)
TAAGCTCTTCGCATTTCTCGGTGAA
LOC_Os08g08100
OsAffx.29096.1.S1_at--429--4131Chr08:4591025..4591049 (25 bp)
CGCATTTCTCGGTGAAGTGAAGGGA
LOC_Os08g08100
OsAffx.29096.1.S1_at--980--4511Chr08:4591059..4591083 (25 bp)
GCCGCGGTTGCCGTACTTGTAGGCG
LOC_Os08g08100
OsAffx.29096.1.S1_at--829--2551Chr08:4591123..4591147 (25 bp)
AACGGCGGGCCAAAGCTCAAACCTG
LOC_Os08g08100
Target Sequence 
TTTTCCGTTGGCAAAAATATTCACGTCTTTGATCCATGGAGATCGAGGAAGGCAGGAAGAAAGAAATCAAGAAAACAAAA
ATCACAAGCAAAGCCCAAGAAAATGGACATGGAAATGGATGTGGCCTCAGGAGTTTGGGCCCCAGAAGGAGATGAACATG
AACGCCCGCAGCGACTCCTCCTCCCTCTTCCTCCTCCTCCTCCGATCATCCTCCTCCTCCTCCGCCGCATTCGCCGCCCT
CATCGCCTGCCTCGACGACAGCGAGCCCCCCGCCGCAGCCGCCGCCCTATCCTTCGCGTTCCACGTCGTGGCGGCGCCTC
CGTCTCGCGTTTTCCCTGCCGGCGCCGGCGCCGGCGATGGAGCCACCCGAGCGCCGCCCACGCGACCCGCCAACCTCACG
CTCATCGCCGCCGCCGCTAAGCTCTTCGCATTTCTCGGTGAAGTGAAGGGAGAGGAAGGGGCCGCGGTTGCCGTACTTGT
AGGCGGCGCGGTGCGGTGGGCGGCGCCGCTGGTTACGCCGGCGAAACGGCGGGCCAAAGCTCAAACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis