Browse Element(s) Details


Os.5402.1.S1_at

Description gb:AK066600.1
DB_XREF= gi:32976618
TID=Os.5402.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5402 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013071I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071I18, full insert sequence.
FL= gb:AK066600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0811011/11diacylglycerol kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08060Os.5348.1.S1_at11/118+4564674..4574398Pep3/Vps18/deep orange family protein, expressed
LOC_Os08g08070Os.10571.1.S1_at11/118+4575088..4577145Glucose transporter, putative, expressed
LOC_Os08g08070OsAffx.7485.1.S1_x_at1/118+4575088..4577145Glucose transporter, putative, expressed
LOC_Os08g08080Os.27398.1.S1_at11/118+4580134..4584889LOC564510 protein, putative, expressed
LOC_Os08g08090Os.55321.1.S1_at11/118+4587327..4587829expressed protein
LOC_Os08g08100OsAffx.29096.1.S1_at11/118+4589434..4591178hypothetical protein
LOC_Os08g08110Os.5402.1.S1_at11/118+4593401..4598370diacylglycerol kinase, putative, expressed
LOC_Os08g08120Os.49576.1.S1_at11/118+4604159..4606390B-box zinc finger family protein, expressed
LOC_Os08g08120Os.11132.1.S1_s_at11/118+4604159..4606390B-box zinc finger family protein, expressed
LOC_Os08g08130Os.31233.1.S1_at1/118+4611650..4613757transposon protein, putative, Pong sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0004143molecular_functiondiacylglycerol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5402.1.S1_at--293--3291Chr08:4593979..4594003 (25 bp)
CAAAGGATCCGTTTCGAGTTCCACA
LOC_Os08g08110
Os.5402.1.S1_at--319--10311Chr08:4593968..4593992 (25 bp)
TTTCGAGTTCCACAAAGGCGCAGCA
LOC_Os08g08110
Os.5402.1.S1_at--1007--5051Chr08:4593949..4593973 (25 bp)
GCAGCAGAGCACACCTTCATGAGGA
LOC_Os08g08110
Os.5402.1.S1_at--601--8551Chr08:4593870..4593894 (25 bp)
TGGAGATCTCCCACCTTGGTCAGGT
LOC_Os08g08110
Os.5402.1.S1_at--811--3251Chr08:4593833..4593857 (25 bp)
CAACGAGCCCTGCAAGTCGAAGAGC
LOC_Os08g08110
Os.5402.1.S1_at--586--2771Chr08:4593814..4593838 (25 bp)
AAGAGCGTCCATGACGACCAATCCT
LOC_Os08g08110
Os.5402.1.S1_at--1151--1191Chr08:4593702..4593726 (25 bp)
AGTTTGGTGCCGCAGATACATTCAA
LOC_Os08g08110
Os.5402.1.S1_at--796--9871Chr08:4593686..4593710 (25 bp)
TACATTCAAGATCCCTGACGAGGTT
LOC_Os08g08110
Os.5402.1.S1_at--1091--6651Chr08:4593664..4593688 (25 bp)
GTTGACATTGCTCACCTCAGCTGAA
LOC_Os08g08110
Os.5402.1.S1_at--86--7871Chr08:4593630..4593654 (25 bp)
GGTATCTTTTCTAGGTTGCATTCTT
LOC_Os08g08110
Os.5402.1.S1_at--1114--6531Chr08:4593578..4593602 (25 bp)
GATTTTTGTCTTCGATTCCTTCAAC
LOC_Os08g08110
Target Sequence 
CAAAGGATCCGTTTCGAGTTCCACAAAGGCGCAGCAGAGCACACCTTCATGAGGATCGATGGGGAGCCATGGAAGCAGCC
CCTCCCAAAAGATGACGACACCGTTGTTGTGGAGATCTCCCACCTTGGTCAGGTCACCATGCTTGCCAACGAGCCCTGCA
AGTCGAAGAGCGTCCATGACGACCAATCCTCCCACGCACAACACAGCGGCCATGGCAACAACGACGACGACAAGGACAGC
ATGGAGGACGAAGATGAGTGGGAGGATGGCAGGAGGAAGTTTGGTGCCGCAGATACATTCAAGATCCCTGACGAGGTTGA
CATTGCTCACCTCAGCTGAACTCAGAATTGGTATCTTTTCTAGGTTGCATTCTTGATGTTCATAATCTTCTTCAGTAAAG
TGATTTTTGTCTTCGATTCCTTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis