Browse Element(s) Details


OsAffx.5745.1.S1_x_at

Description tigr:9636.m00745
TID=OsAffx.5745.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0800011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07960Os.15548.1.S1_at11/118+4490341..4495898mRNA-associated protein mrnp 41, putative, expressed
LOC_Os08g07970Os.20077.1.S1_at11/118+4499401..4501882Transcription factor TGA4, putative, expressed
LOC_Os08g07970Os.20077.3.S1_x_at11/118+4499401..4501882Transcription factor TGA4, putative, expressed
LOC_Os08g07984NANA8+4509192..4509464NA
LOC_Os08g08000OsAffx.5745.1.S1_x_at11/118+4517322..4525712expressed protein
LOC_Os08g08000Os.9252.1.S1_at10/118+4517322..4525712expressed protein
LOC_Os08g08000Os.51691.1.S2_at10/118+4517322..4525712expressed protein
LOC_Os08g08020OsAffx.29094.1.S1_at11/118+4540627..4543036expressed protein
LOC_Os08g08030OsAffx.29095.1.S1_at11/118+4545166..4551186Double-strand break repair protein MRE11, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5745.1.S1_x_at--537--1271Chr08:4518824..4518848 (25 bp)
AGATGCCTCATTCACCAATACAAAC
LOC_Os08g08000
OsAffx.5745.1.S1_x_at--1136--3271Chr08:4518783..4518807 (25 bp)
CAAAGCTCAATGCAGGGTTCTCCTA
LOC_Os08g08000
OsAffx.5745.1.S1_x_at--756--7671Chr08:4518769..4518793 (25 bp)
GGGTTCTCCTAACCAGACTATGTTA
LOC_Os08g08000
OsAffx.5745.1.S1_x_at--401--6771Chr08:4518748..4518772 (25 bp)
GTTAACTTCTCAACAAGCTCCACTT
LOC_Os08g08000
OsAffx.5745.1.S1_x_at--426--9591Chr08:4518724..4518748 (25 bp)
TCATTCGTCATCTCCATTGGCACAG
LOC_Os08g08000
OsAffx.5745.1.S1_x_at--449--7951Chr08:4518611..4518635 (25 bp)
GGATAGAATCACCTGTTGACCAAGT
LOC_Os08g08000
OsAffx.5745.1.S1_x_at--111--1671Chr08:4518531..4518555 (25 bp)
AGCCCAGGTGGTGTTTCATCTATAA
LOC_Os08g08000
OsAffx.5745.1.S1_x_at--237--371Chr08:4518463..4518487 (25 bp)
ATCAACCTCGCAGTTAGCTAGCTCG
LOC_Os08g08000
OsAffx.5745.1.S1_x_at--298--10011Chr08:4518445..4518469 (25 bp)
TAGCTCGCCTCAAGATACCTTTGTT
LOC_Os08g08000
OsAffx.5745.1.S1_x_at--109--631Chr08:4518411..4518435 (25 bp)
ATGCTGTTGTCAGTGTCTAGCCAAG
LOC_Os08g08000
OsAffx.5745.1.S1_x_at--532--5131Chr08:4518373..4518397 (25 bp)
GCAAATGTCAGGTGGCGTGCCTATA
LOC_Os08g08000
Target Sequence 
AGATGCCTCATTCACCAATACAAACATCAGATGTAGGTAGTCAAAGCTCAATGCAGGGTTCTCCTAACCAGACTATGTTA
ACTTCTCAACAAGCTCCACTTCATTCGTCATCTCCATTGGCACAGCAGCAGCAACAACGGTACATGAATCCATCACATAA
CAACATCCAGAGATTGGTGATGCAACAAAACCGTCATATGAACACTGATGGTAGGATAGAATCACCTGTTGACCAAGTTC
AACATAATCAGGCAATTCCCTCCACATCCATTGCAAAGAGTACAGATTCAGGTAGCCCAGGTGGTGTTTCATCTATAAAC
CAGCGGAGACAAGAGTCATCTCATGATCCAACTACAGTTCCATCAACCTCGCAGTTAGCTAGCTCGCCTCAAGATACCTT
TGTTGGAAATGAAATGCTGTTGTCAGTGTCTAGCCAAGGCATGTTGCAAAGGCAAATGTCAGGTGGCGTGCCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5745.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis