Browse Element(s) Details


Os.15548.1.S1_at

Description gb:AK111670.1
DB_XREF= gi:37988333
TID=Os.15548.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013156C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156C15, full insert sequence.
FL= gb:AK111670.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0796011/11mRNA-associated protein mrnp 41, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07930OsAffx.29091.1.S1_at11/118+4459685..4465429NB-ARC domain containing protein
LOC_Os08g07940OsAffx.29093.1.S1_at11/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.16886.1.S1_at11/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.8747.3.S1_x_at2/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.30177.1.S1_x_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.27021.1.S1_x_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.27021.1.S1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.50043.1.A1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.29172.1.S1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07950OsAffx.16887.1.S1_at11/118+4481383..4489254NB-ARC domain containing protein, expressed
LOC_Os08g07960Os.15548.1.S1_at11/118+4490341..4495898mRNA-associated protein mrnp 41, putative, expressed
LOC_Os08g07970Os.20077.1.S1_at11/118+4499401..4501882Transcription factor TGA4, putative, expressed
LOC_Os08g07970Os.20077.3.S1_x_at11/118+4499401..4501882Transcription factor TGA4, putative, expressed
LOC_Os08g07984NANA8+4509192..4509464NA
LOC_Os08g08000OsAffx.5745.1.S1_x_at11/118+4517322..4525712expressed protein
LOC_Os08g08000Os.9252.1.S1_at10/118+4517322..4525712expressed protein
LOC_Os08g08000Os.51691.1.S2_at10/118+4517322..4525712expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15548.1.S1_at--1115--2751Chr08:4490997..4491021 (25 bp)
AAGACATCCATCTATCTTCACAGTC
LOC_Os08g07960
Os.15548.1.S1_at--453--1111Chr08:4490835..4490859 (25 bp)
AGTGATTACATCCAGCTACGCAAAA
LOC_Os08g07960
Os.15548.1.S1_at--450--7271Chr08:4490750..4490774 (25 bp)
GTCCATCGTGTAGGATGCTTTTCTC
LOC_Os08g07960
Os.15548.1.S1_at--257--9071Chr08:4490735..4490759 (25 bp)
TGCTTTTCTCTTGGTTGGTCATCAA
LOC_Os08g07960
Os.15548.1.S1_at--1058--3171Chr08:4490713..4490737 (25 bp)
CAATTTTGTTGTGTCCAGTCTGGTG
LOC_Os08g07960
Os.15548.1.S1_at--666--3451Chr08:4490698..4490722 (25 bp)
CAGTCTGGTGTTAGCATCTGGTAGA
LOC_Os08g07960
Os.15548.1.S1_at--962--7211Chr08:4490629..4490653 (25 bp)
GTCGCAGGTTTTAGCATGCATCAGT
LOC_Os08g07960
Os.15548.1.S1_at--409--4971Chr08:4490612..4490636 (25 bp)
GCATCAGTTTGCAGTGTCTAGTTCT
LOC_Os08g07960
Os.15548.1.S1_at--879--731Chr08:4490578..4490602 (25 bp)
ATGTTTACCAAGTTTATGCGAGTCT
LOC_Os08g07960
Os.15548.1.S1_at--405--10131Chr08:4490542..4490566 (25 bp)
TATAATCAGATCAGCCCGAACCGTT
LOC_Os08g07960
Os.15548.1.S1_at--566--5211Chr08:4490458..4490482 (25 bp)
GAATTATCGCCACGTTCTGAGATGT
LOC_Os08g07960
Target Sequence 
AAGACATCCATCTATCTTCACAGTCCACAGGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATT
ACATCCAGCTACGCAAAACCAAAGAGTGCACAAGAAATCATGTACATTGGAAGACAAAAACGTTTCTCCAGGACCTCTNN
GTCCATCGTGTAGGATGCTTTTCTCTTGGTTGGTCATCAATTTTGTTGTGTCCAGTCTGGTGTTAGCATCTGGTAGATGT
AAATGTCAGNCTACTCGTAGTCACTGAAGATAGGGGGTTTAGTCGCAGGTTTTAGCATGCATCAGTTTGCAGTGTCTAGT
TCTATTTAAGTTATGTTTACCAAGTTTATGCGAGTCTTATGTTGTCGATATAATCAGATCAGCCCGAACCGTTTCTAAGG
GAGGTGTTGCAAGTGATGTAAATTATTGCAAATGTAGATTCATATTTCGTTAGAATTATCGCCACGTTCTGAGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis