Browse Element(s) Details


Os.9252.1.S1_at

Description gb:AK105561.1
DB_XREF= gi:32990770
TID=Os.9252.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-B09, full insert sequence.
FL= gb:AK105561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0800010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07960Os.15548.1.S1_at11/118+4490341..4495898mRNA-associated protein mrnp 41, putative, expressed
LOC_Os08g07970Os.20077.1.S1_at11/118+4499401..4501882Transcription factor TGA4, putative, expressed
LOC_Os08g07970Os.20077.3.S1_x_at11/118+4499401..4501882Transcription factor TGA4, putative, expressed
LOC_Os08g07984NANA8+4509192..4509464NA
LOC_Os08g08000OsAffx.5745.1.S1_x_at11/118+4517322..4525712expressed protein
LOC_Os08g08000Os.9252.1.S1_at10/118+4517322..4525712expressed protein
LOC_Os08g08000Os.51691.1.S2_at10/118+4517322..4525712expressed protein
LOC_Os08g08020OsAffx.29094.1.S1_at11/118+4540627..4543036expressed protein
LOC_Os08g08030OsAffx.29095.1.S1_at11/118+4545166..4551186Double-strand break repair protein MRE11, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9252.1.S1_at--862--6771NONE
GTTACTGTACAGGTGTTCGTGCTGT
NONE
Os.9252.1.S1_at--860--7851Chr08:4517659..4517683 (25 bp)
GGTAGATAATTATTTCCGCGCCATT
LOC_Os08g08000
Os.9252.1.S1_at--575--1751Chr08:4517626..4517650 (25 bp)
ACCTCTCAGCTTGGTTAGATTCTAG
LOC_Os08g08000
Os.9252.1.S1_at--511--8031Chr08:4517592..4517616 (25 bp)
GGAGTGGTTCTTGTAACGGCAAATT
LOC_Os08g08000
Os.9252.1.S1_at--735--6631Chr08:4517561..4517585 (25 bp)
GTTGTCAAAATGTTACCCCAGTGTG
LOC_Os08g08000
Os.9252.1.S1_at--430--8771Chr08:4517528..4517552 (25 bp)
TGTATATTTTGTCCGCGAGGTCCAC
LOC_Os08g08000
Os.9252.1.S1_at--555--6131Chr08:4517512..4517536 (25 bp)
GAGGTCCACGTTGTTGGCAGCCGTC
LOC_Os08g08000
Os.9252.1.S1_at--280--1651Chr08:4517494..4517518 (25 bp)
AGCCGTCCTTTTGTATAAGCCTGTA
LOC_Os08g08000
Os.9252.1.S1_at--452--9791Chr08:4517479..4517503 (25 bp)
TAAGCCTGTATATTTATCTCACGAG
LOC_Os08g08000
Os.9252.1.S1_at--1137--6811Chr08:4517408..4517432 (25 bp)
GTTTAATCTTGCAGCATCCCCAACA
LOC_Os08g08000
Os.9252.1.S1_at--630--531Chr08:4517393..4517417 (25 bp)
ATCCCCAACAGTCATATTCTTCAAG
LOC_Os08g08000
Target Sequence 
GTTACTGTACAGGTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAACTTTGAGCTAATTGTAG
TCTCAATGCCAGGTAGATAATTATTTCCGCGCCATTTTGGCTCCACCTCTCAGCTTGGTTAGATTCTAGATTGCTGAGGG
AGTGGTTCTTGTAACGGCAAATTTCTTTTGTTGTCAAAATGTTACCCCAGTGTGGGCCCGGTTGTATATTTTGTCCGCGA
GGTCCACGTTGTTGGCAGCCGTCCTTTTGTATAAGCCTGTATATTTATCTCACGAGTTGGTGAATGCAAAAGCCATTGTT
CACGTAAAACAACTCACAAACTGTTTAATCTTGCAGCATCCCCAACAGTCATATTCTTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis