Browse Element(s) Details


OsAffx.7318.1.S1_at

Description tigr:9639.m03338
TID=OsAffx.7318.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3693011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36880OsAffx.4222.1.S1_at3/1111+21252521..21258771retrotransposon protein, putative, unclassified
LOC_Os11g36880OsAffx.21100.1.S1_at2/1111+21252521..21258771retrotransposon protein, putative, unclassified
LOC_Os11g36890OsAffx.19202.1.S1_at10/1111+21259914..21262345hypothetical protein
LOC_Os11g36890Os.14983.1.S1_a_at2/1111+21259914..21262345hypothetical protein
LOC_Os11g36890Os.51591.1.S1_at1/1111+21259914..21262345hypothetical protein
LOC_Os11g36900OsAffx.31335.1.S1_at11/1111+21264128..21264409hypothetical protein
LOC_Os11g36910OsAffx.19203.1.S1_at11/1111+21267182..21267544hypothetical protein
LOC_Os11g36920NANA11+21278734..21280743hypothetical protein
LOC_Os11g36930OsAffx.7318.1.S1_at11/1111+21282341..21287544hypothetical protein
LOC_Os11g36940OsAffx.31336.1.S1_x_at11/1111+21288784..21290262Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os11g36940OsAffx.31336.1.S1_at11/1111+21288784..21290262Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os11g36950OsAffx.31337.1.S1_at10/1111+21295469..21297132T-complex protein 1, theta subunit, putative
LOC_Os11g36960OsAffx.31338.3.S1_at11/1111+21304782..21307940DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7318.1.S1_at--908--6231Chr11:21284412..21284432 (21 bp)
GATGGCTTTCGTATTCTGACAACTT
LOC_Os11g36930
OsAffx.7318.1.S1_at--364--7391Chr11:21285817..21285841 (25 bp)
GTGAGGTCCTCGTTGAAAATGCTAA
LOC_Os11g36930
OsAffx.7318.1.S1_at--174--2951Chr11:21285834..21285858 (25 bp)
AATGCTAACCCCTCAGATTTGGAAT
LOC_Os11g36930
OsAffx.7318.1.S1_at--570--2931Chr11:21286813..21286836 (24 bp)
AAGGCACCTCCAATTATCAGAACTC
LOC_Os11g36930
OsAffx.7318.1.S1_at--1005--6412Chr11:21286870..21286894 (25 bp)
GATCTCTGATCCCTCTTTATACAAG
LOC_Os11g36930
OsAffx.7318.1.S1_at--293--7031Chr11:21287011..21287035 (25 bp)
GTAAATCAGCAAGCCACTCGGTATG
LOC_Os11g36930
OsAffx.7318.1.S1_at--1008--1991Chr11:21287026..21287050 (25 bp)
ACTCGGTATGGCTATAGCGCTTTAC
LOC_Os11g36930
OsAffx.7318.1.S1_at--526--1651Chr11:21287041..21287065 (25 bp)
AGCGCTTTACACAGGCCAGCTATTG
LOC_Os11g36930
OsAffx.7318.1.S1_at--90--6151Chr11:21287221..21287245 (25 bp)
GAGGTGGAGCATTCGCACCAATCAT
LOC_Os11g36930
OsAffx.7318.1.S1_at--777--8171Chr11:21287280..21287304 (25 bp)
GGAACTATGTGTCATCTGCTTCTTT
LOC_Os11g36930
OsAffx.7318.1.S1_at--1001--111Chr11:21287312..21287336 (25 bp)
ATTCTACTATCGCAATGGCTTCAGG
LOC_Os11g36930
Target Sequence 
GATGGCTTTCGTATTCTGACAACTTAATTGCTGGAGAAGATAAAAGAAGTGAGGTCCTCGTTGAAAATGCTAACCCCTCA
GATTTGGAATTGATTGATGTGGAGGACAATGGGGTGAAGCCTTCAGCGACACTAGAAACAAAAGGCACCTCCAATTATCA
GAACTCAGTACAGGACGTTCCTAAGATTTTGGTTCCAAAGATCTCTGATCCCTCTTTATACAAGCCCCCTCCTGATCCGC
GGATCGTAAATCAGCAAGCCACTCGGTATGGCTATAGCGCTTTACACAGGCCAGCTATTGGACAAAGTGTTGTGACTCCA
GTAAATAGACTTGTGGAGATCGTTGATGCAGCAAATAAGTTTGACCCATACGAGGTGGAGCATTCGCACCAATCATACAG
AAGAGAACAGGCTAAGATCCCAAAGGATCAGGAACTATGTGTCATCTGCTTCTTTGAGAGATATTCTACTATCGCAATGG
CTTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis