Browse Element(s) Details


OsAffx.7327.1.S1_at

Description tigr:9639.m03393
TID=OsAffx.7327.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3750011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37440NANA11+21607131..21611404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g37460Os.50120.1.S1_at1/1111+21614659..21617988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37470OsAffx.19216.1.S1_at11/1111+21621434..21623485hypothetical protein
LOC_Os11g37480NANA11+21629583..21629801hypothetical protein
LOC_Os11g37490Os.56065.1.S1_s_at11/1111+21633112..21633876expressed protein
LOC_Os11g37500OsAffx.7327.1.S1_at11/1111+21634791..21635297hypothetical protein
LOC_Os11g37510Os.13975.1.S1_at11/1111+21638610..21642206ribosomal protein L4/L1 family protein, expressed
LOC_Os11g37520Os.6117.1.S1_at11/1111+21649398..21654156ETO1-like protein 1, putative, expressed
LOC_Os11g37530NANA11+21655234..21657383hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7327.1.S1_at--534--971Chr11:21634830..21634854 (25 bp)
AGGAGCGTGCACAGTGGATCCGGCG
LOC_Os11g37500
OsAffx.7327.1.S1_at--495--1531Chr11:21635026..21635050 (25 bp)
AGCAGGGTGTCGTCACGACGTTCGC
LOC_Os11g37500
OsAffx.7327.1.S1_at--195--4031Chr11:21635036..21635060 (25 bp)
CGTCACGACGTTCGCTCGTCCTAGG
LOC_Os11g37500
OsAffx.7327.1.S1_at--859--10591Chr11:21635070..21635094 (25 bp)
TTCGTCCGCGAGGTTTGGCCGGATC
LOC_Os11g37500
OsAffx.7327.1.S1_at--1097--9291Chr11:21635074..21635098 (25 bp)
TCCGCGAGGTTTGGCCGGATCGATT
LOC_Os11g37500
OsAffx.7327.1.S1_at--505--1271Chr11:21635105..21635129 (25 bp)
AGATCTGAAAGGAATATTCGTCTCC
LOC_Os11g37500
OsAffx.7327.1.S1_at--710--10231Chr11:21635166..21635190 (25 bp)
TTTGTCCCATCCCATACCATTCTTG
LOC_Os11g37500
OsAffx.7327.1.S1_at--132--3252Chr11:21635191..21635215 (25 bp)
CAACCAAACACTACCCTACTGAATG
LOC_Os11g37500
OsAffx.7327.1.S1_at--294--2471Chr11:21635197..21635221 (25 bp)
AACACTACCCTACTGAATGGGCCTG
LOC_Os11g37500
OsAffx.7327.1.S1_at--407--1971Chr11:21635208..21635232 (25 bp)
ACTGAATGGGCCTGGATTGTGTCCT
LOC_Os11g37500
OsAffx.7327.1.S1_at--1108--8511Chr11:21635220..21635244 (25 bp)
TGGATTGTGTCCTCCCTAAAAAGGC
LOC_Os11g37500
Target Sequence 
AGGAGCGTGCACAGTGGATCCGGCGCCACCGAGTCCCCCGCCTTAGGATCTGCCGCCGCAGCCCTCCCCATCGCTGGTTT
CGCCGCTACCGCCCTCCCCACCACTAGATCCGTCGTCGCCAAGCCCCCCACCGCCGCCGTCGCCGAGCCCACCGTTGTCG
TCACCGCAGGCGCTTCCGAGGGCGACCAGGGCGGTGAGCAGGGTGTCGTCACGACGTTCGCTCGTCCTAGGTGGGACGAG
TTCGTCCGCGAGGTTTGGCCGGATCGATTGGTCCCAGATCTGAAAGGAATATTCGTCTCCAGGGACCAACCCATCCCACT
CACCCCTAAAACTACGTTTGTCCCATCCCATACCATTCTTGCAACCAAACACTACCCTACTGAATGGGCCTGGATTGTGT
CCTCCCTAAAAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis