Browse Element(s) Details


OsAffx.7340.1.S1_at

Description tigr:9639.m03482
TID=OsAffx.7340.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3838011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38340OsAffx.7338.1.S1_at11/1111+22207571..22210922hypothetical protein
LOC_Os11g38350NANA11+22211706..22213103retrotransposon protein, putative, unclassified
LOC_Os11g38360NANA11+22214002..22217899retrotransposon protein, putative, unclassified
LOC_Os11g38370OsAffx.32072.2.S1_x_at5/1111+22226290..22226544hypothetical protein
LOC_Os11g38370OsAffx.32072.1.S1_x_at4/1111+22226290..22226544hypothetical protein
LOC_Os11g38380OsAffx.7340.1.S1_at11/1111+22227878..22231599hypothetical protein
LOC_Os11g38390OsAffx.7340.2.S1_at11/1111+22234094..22236108hypothetical protein
LOC_Os11g38400OsAffx.31364.1.S1_at11/1111+22237414..22237797hypothetical protein
LOC_Os11g38410NANA11+22245684..22246118hypothetical protein
LOC_Os11g38420Os.20602.2.S1_x_at10/1111+22253727..22255907hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7340.1.S1_at--638--7651Chr11:22231018..22231042 (25 bp)
GGGATGTCAATGTGGGAGGCCTGCT
LOC_Os11g38380
OsAffx.7340.1.S1_at--960--5951Chr11:22231076..22231100 (25 bp)
GAGAAGACGCCGCACGAGACCTGAC
LOC_Os11g38380
OsAffx.7340.1.S1_at--420--5811Chr11:22231081..22231105 (25 bp)
GACGCCGCACGAGACCTGACAATGG
LOC_Os11g38380
OsAffx.7340.1.S1_at--252--1771Chr11:22231094..22231118 (25 bp)
ACCTGACAATGGTGGACGGCTGCGT
LOC_Os11g38380
OsAffx.7340.1.S1_at--562--8531Chr11:22231118..22231142 (25 bp)
TGGACATCCAGGAGCACCGCTGCGG
LOC_Os11g38380
OsAffx.7340.1.S1_at--603--4771Chr11:22231136..22231160 (25 bp)
GCTGCGGCTACGACAGCCACTTCAA
LOC_Os11g38380
OsAffx.7340.1.S1_at--1058--1991Chr11:22231199..22231223 (25 bp)
ACTCGATGGTCATCCAGGCCGCCGT
LOC_Os11g38380
OsAffx.7340.1.S1_at--1055--7211Chr11:22231222..22231246 (25 bp)
GTCGAGGCCACCATACAGCTCGAAT
LOC_Os11g38380
OsAffx.7340.1.S1_at--626--3371Chr11:22231230..22231254 (25 bp)
CACCATACAGCTCGAATTCCGGCGG
LOC_Os11g38380
OsAffx.7340.1.S1_at--592--10551Chr11:22231495..22231519 (25 bp)
TTCTTGTCAGCTAGGCATGACAGGG
LOC_Os11g38380
OsAffx.7340.1.S1_at--588--3391Chr11:22231502..22231526 (25 bp)
CAGCTAGGCATGACAGGGAAGTGAA
LOC_Os11g38380
Target Sequence 
GGGATGTCAATGTGGGAGGCCTGCTTGATCGAGACCGACATAAGAATCAAGGTGCAAGGAGAAGACGCCGCACGAGACCT
GACAATGGTGGACGGCTGCGTGGACATCCAGGAGCACCGCTGCGGCTACGACAGCCACTTCAAGAACCGGATCGACGGCG
AGCTCGGCGCCGTCCTCACCCACTCGATGGTCATCCAGGCCGCCGTCGAGGCCACCATACAGCTCGAATTCCGGCGGCTC
CCCGCGGCGGCGGCCGGCGGCGGTGATTTCCGCGTGCGGATGACGGGCTACACCAGGGCTCGGCCGTCGGACCACCACAA
CCCCGACAACACCTACGTGTTCGCCGGCGATGGCCGTGAGCTGCACGAGATCGTCGTGCTCGCCGCCGGCGAGCTGGAGC
ACAGGTTCGTCGCCGCCGTGAGGCTGGGCGACACGCTGGAGCTGTCCTTCATGGAGGAAGGGCGAGAGCCTCTGGAGTTC
TTGTCAGCTAGGCATGACAGGGAAGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis