Browse Element(s) Details


OsAffx.7370.1.S1_at

Description tigr:9639.m03774
TID=OsAffx.7370.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g400091/11Patatin-like phospholipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39969NANA11+23327976..23328433NA
LOC_Os11g39980OsAffx.31399.1.S1_at11/1111+23335801..23337085Zinc knuckle family protein
LOC_Os11g39990Os.49524.1.S1_at9/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g39990Os.8523.1.S1_at3/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g39990Os.46576.1.S1_x_at1/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.8523.1.S1_at11/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.56286.1.S1_at11/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.49524.1.S1_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009OsAffx.7370.1.S1_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.52047.1.S1_x_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40030OsAffx.19266.1.S1_s_at11/1111+23364736..23366261Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os11g40040NANA11+23372924..23373412transposon protein, putative, unclassified
LOC_Os11g40050NANA11+23377391..23380693retrotransposon protein, putative, unclassified
LOC_Os11g40060NANA11+23381318..23387472retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7370.1.S1_at--316--4911Chr11:24139677..24139701 (25 bp)
GCTTCTCCTGGATTTCTGTTAGTAC
NONE
OsAffx.7370.1.S1_at--496--6751Chr11:24139694..24139939 (25 bp)
GTTAGTACTGGAAAACCGTCGGCTG
NONE
OsAffx.7370.1.S1_at--493--5491Chr11:24139925..24139949 (25 bp)
GAAAACCGTCGGCTGAAACCCACTG
NONE
OsAffx.7370.1.S1_at--457--8952Chr11:24139938..24139962 (25 bp)
TGAAACCCACTGCTACACAACTAAC
NONE
OsAffx.7370.1.S1_at--95--9812Chr11:24139951..24139975 (25 bp)
TACACAACTAACAACGACGGCAGAG
NONE
OsAffx.7370.1.S1_at--263--5751Chr11:24139966..24139990 (25 bp)
GACGGCAGAGCCCAAACACTGGATA
NONE
OsAffx.7370.1.S1_at--846--2471Chr11:24139980..24140004 (25 bp)
AACACTGGATATCGCTGTCAAGCTA
NONE
OsAffx.7370.1.S1_at--1031--2475Chr11:24140021..24140045 (25 bp)
AACAGCTCCCACATCGCAGAAGAAC
NONE
OsAffx.7370.1.S1_at--517--5371Chr11:24140039..24140063 (25 bp)
GAAGAACTGTTATCGTTACCGAGCT
NONE
OsAffx.7370.1.S1_at--1162--6771Chr11:24140053..24140077 (25 bp)
GTTACCGAGCTAGCTGCCCAAGCAA
NONE
OsAffx.7370.1.S1_at--347--5071Chr11:24140102..24140126 (25 bp)
GCAGCGACACTAAAGCCACGAAAGT
NONE
Target Sequence 
GCTTCTCCTGGATTTCTGTTAGTACTGGAAAACCGTCGGCTGAAACCCACTGCTACACAACTAACAACGACGGCAGAGCC
CAAACACTGGATATCGCTGTCAAGCTAAACACAAAAGCGACACAACAGCTCCCACATCGCAGAAGAACTGTTATCGTTAC
CGAGCTAGCTGCCCAAGCAACCCAGCAGTGCCGACTTCACAACCGCAGCGACACTAAAGCCACGAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis