Browse Element(s) Details


OsAffx.7382.1.S1_at

Description tigr:9639.m03880
TID=OsAffx.7382.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4215011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42100OsAffx.19324.1.S1_at11/1111+24857003..24859425Leucine Rich Repeat family protein, expressed
LOC_Os11g42110NANA11+24860073..24860558hypothetical protein
LOC_Os11g42120OsAffx.19326.1.S1_at11/1111+24866925..24867314hypothetical protein
LOC_Os11g42130NANA11+24870585..24873821transposon protein, putative, unclassified
LOC_Os11g42140NANA11+24874452..24880610transposon protein, putative, unclassified
LOC_Os11g42150OsAffx.7382.1.S1_at11/1111+24881400..24883829hypothetical protein
LOC_Os11g42160Os.26855.1.A1_at10/1111+24892696..24898109Leucine Rich Repeat family protein, expressed
LOC_Os11g42170OsAffx.19327.1.S1_s_at11/1111+24898612..24899505expressed protein
LOC_Os11g42170OsAffx.19327.1.S1_at11/1111+24898612..24899505expressed protein
LOC_Os11g42180Os.14491.2.S1_x_at2/1111+24904733..24907677transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g42190NANA11+24907885..24914979transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7382.1.S1_at--898--9191Chr11:24883514..24883538 (25 bp)
TCCAATTATGCGCAGCCGTGCTAGG
LOC_Os11g42150
OsAffx.7382.1.S1_at--554--3171Chr11:24883516..24883540 (25 bp)
CAATTATGCGCAGCCGTGCTAGGAA
LOC_Os11g42150
OsAffx.7382.1.S1_at--1152--10411Chr11:24883519..24883543 (25 bp)
TTATGCGCAGCCGTGCTAGGAAGAT
LOC_Os11g42150
OsAffx.7382.1.S1_at--262--611Chr11:24883521..24883545 (25 bp)
ATGCGCAGCCGTGCTAGGAAGATAC
LOC_Os11g42150
OsAffx.7382.1.S1_at--90--4131Chr11:24883524..24883548 (25 bp)
CGCAGCCGTGCTAGGAAGATACAAT
LOC_Os11g42150
OsAffx.7382.1.S1_at--1040--5071Chr11:24883525..24883549 (25 bp)
GCAGCCGTGCTAGGAAGATACAATA
LOC_Os11g42150
OsAffx.7382.1.S1_at--641--4491Chr11:24883528..24883552 (25 bp)
GCCGTGCTAGGAAGATACAATAAGA
LOC_Os11g42150
OsAffx.7382.1.S1_at--219--5311Chr11:24883669..24883693 (25 bp)
GAAGGATGTGTTACGTTGAAGACTA
LOC_Os11g42150
OsAffx.7382.1.S1_at--429--7991Chr11:24883672..24883696 (25 bp)
GGATGTGTTACGTTGAAGACTACAA
LOC_Os11g42150
OsAffx.7382.1.S1_at--965--8651Chr11:24883675..24883699 (25 bp)
TGTGTTACGTTGAAGACTACAAGGG
LOC_Os11g42150
OsAffx.7382.1.S1_at--1060--5331Chr11:24883754..24883778 (25 bp)
GAAGATTGTTTACGCTGCAAAAGGC
LOC_Os11g42150
Target Sequence 
TCCAATTATGCGCAGCCGTGCTAGGAAGATACAATAAGAGGTTTACGCCCGAGGACATCATCACTACGCAAAGAAGGATG
TGTTACGTTGAAGACTACAAGGGTTACGTCGAGCAGGAATCAGCCCATGCCCAACCAGTAGCTGTCTACGCCAGCAAGAA
GATTGTTTACGCTGCAAAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis