Browse Element(s) Details


OsAffx.7389.1.S1_at

Description tigr:9639.m03934
TID=OsAffx.7389.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4264011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42610Os.50833.1.S1_at2/1111+25146468..25149733transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g42620NANA11+25155223..25162062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42630NANA11+25166271..25172697retrotransposon protein, putative, unclassified
LOC_Os11g42640OsAffx.7389.1.S1_at11/1111+25173265..25176400hypothetical protein
LOC_Os11g42650Os.45173.5.S1_x_at4/1111+25177309..25191048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42650Os.47999.3.A1_x_at2/1111+25177309..25191048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42650Os.47999.2.A1_x_at2/1111+25177309..25191048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42650Os.45173.1.S1_x_at1/1111+25177309..25191048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42660OsAffx.31444.1.S1_at11/1111+25193894..25198668Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7389.1.S1_at--539--711Chr11:25173785..25173809 (25 bp)
ATGATCTGAAGAACCGGCTGACCGA
LOC_Os11g42640
OsAffx.7389.1.S1_at--347--6511Chr11:25173762..25173786 (25 bp)
GATATCGCCAATCGGCTGGAGTCCT
LOC_Os11g42640
OsAffx.7389.1.S1_at--727--2811Chr11:25173719..25173743 (25 bp)
AAGATTGCACCTCCATCAGGGTCAG
LOC_Os11g42640
OsAffx.7389.1.S1_at--139--11Chr11:25173679..25173703 (25 bp)
AGACGAACTGCCTGAAGACCTAATG
LOC_Os11g42640
OsAffx.7389.1.S1_at--902--9751Chr11:25173659..25173683 (25 bp)
TAATGGAGGTCCTAACACCGGCCAT
LOC_Os11g42640
OsAffx.7389.1.S1_at--1115--7371Chr11:25173569..25173593 (25 bp)
GTGACCAACTGGAATCGGCTTTATC
LOC_Os11g42640
OsAffx.7389.1.S1_at--363--5171Chr11:25173539..25173563 (25 bp)
GCAAGGCCCAAGTTAACGCTGACAA
LOC_Os11g42640
OsAffx.7389.1.S1_at--629--6951Chr11:25173492..25173516 (25 bp)
GTAGAGCCGATTGTCTTGAAGCACA
LOC_Os11g42640
OsAffx.7389.1.S1_at--94--5431Chr11:25173390..25173414 (25 bp)
GAAGCCGGAATAGCTGCATCCCCTA
LOC_Os11g42640
OsAffx.7389.1.S1_at--1048--2931Chr11:25173336..25173360 (25 bp)
AAGGCATCGGCCAAGTACCTCGCGA
LOC_Os11g42640
OsAffx.7389.1.S1_at--1160--9311Chr11:25173317..25173341 (25 bp)
TCGCGACCCTAAGCAAATCACTGAA
LOC_Os11g42640
Target Sequence 
ATGATCTGAAGAACCGGCTGACCGATATCGCCAATCGGCTGGAGTCCTCGCTGGAGTACTTGGTGGAAGATTGCACCTCC
ATCAGGGTCAGGGTACAAGAAATTCAAGACGAACTGCCTGAAGACCTAATGGAGGTCCTAACACCGGCCATCTTCTTGGA
GCAATACCGATTCAAGCTCAACAAAGCCAAAGAAAGACTCGCAGAGCGACGAGAGCGTGACCAACTGGAATCGGCTTTAT
CCGCCAGCAAGGCCCAAGTTAACGCTGACAAAACCAAGCTGGACGAGTTAGCGGTAGAGCCGATTGTCTTGAAGCACAAA
CTTGAAGAGCTCCGTCGCCTCGAGGCAGAGCTGGTATCGAAGCTGGAATCGACACGTCGAGAAATCCAAGAAGCCGAAGC
CGGAATAGCTGCATCCCCTAAAGCCATAGAAGATCAGATGGCAAAGCTCAAGGCATCGGCCAAGTACCTCGCGACCCTAA
GCAAATCACTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis