Browse Element(s) Details


OsAffx.7395.1.S1_at

Description tigr:9639.m04003
TID=OsAffx.7395.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4334011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43310OsAffx.31455.1.S1_at10/1111+25629486..25631157hypothetical protein
LOC_Os11g43320OsAffx.19352.1.S1_at1/1111+25633493..25636276NB-ARC domain containing protein, expressed
LOC_Os11g43330OsAffx.4416.1.S1_at2/1111+25642148..25644966retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43330Os.46986.1.S1_at1/1111+25642148..25644966retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43340OsAffx.7395.1.S1_at11/1111+25652904..25654516hypothetical protein
LOC_Os11g43350OsAffx.25962.1.S1_at11/1111+25655683..25661428transposon protein, putative, Mutator sub-class
LOC_Os11g43360OsAffx.19350.1.S1_x_at11/1111+25662189..25663480Tropinone reductase homolog At1g07440, putative
LOC_Os11g43360OsAffx.19350.1.S1_at11/1111+25662189..25663480Tropinone reductase homolog At1g07440, putative
LOC_Os11g43370NANA11+25674646..25680747retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7395.1.S1_at--441--3851Chr11:25654006..25654030 (25 bp)
CTGAGTACGACGAGCAGCCAGTAGA
LOC_Os11g43340
OsAffx.7395.1.S1_at--22--3451Chr11:25654024..25654048 (25 bp)
CAGTAGAAGCAGTCGAGCCTCCCGT
LOC_Os11g43340
OsAffx.7395.1.S1_at--851--6151Chr11:25654053..25654077 (25 bp)
GAGGTTATCAACGAGCTAGCCGCCG
LOC_Os11g43340
OsAffx.7395.1.S1_at--818--2891Chr11:25654096..25654120 (25 bp)
AAGGTGATCTTGTGCACGATGATGA
LOC_Os11g43340
OsAffx.7395.1.S1_at--964--8371Chr11:25654149..25654173 (25 bp)
GGCGCACATGCTCAGGAACAGACTC
LOC_Os11g43340
OsAffx.7395.1.S1_at--482--2491Chr11:25654165..25654189 (25 bp)
AACAGACTCGTGTTCATGGTCTTCA
LOC_Os11g43340
OsAffx.7395.1.S1_at--252--2391Chr11:25654275..25654299 (25 bp)
AAACTGCGGCATCAGCAGGAGCACG
LOC_Os11g43340
OsAffx.7395.1.S1_at--238--5771Chr11:25654312..25654336 (25 bp)
GACGATGATGTCAGGCGGTGCCACA
LOC_Os11g43340
OsAffx.7395.1.S1_at--857--6211Chr11:25654363..25654387 (25 bp)
GAGGCCACAAACACGCTTGGAGCTG
LOC_Os11g43340
OsAffx.7395.1.S1_at--796--10091Chr11:25654408..25654432 (25 bp)
TATGGCGGACGAGCGGAACACCAGC
LOC_Os11g43340
OsAffx.7395.1.S1_at--986--4111Chr11:25654446..25654470 (25 bp)
CGCTTGGTCTGCAACTGGACGGAGA
LOC_Os11g43340
Target Sequence 
CTGAGTACGACGAGCAGCCAGTAGAAGCAGTCGAGCCTCCCGTCATCGAGGTTATCAACGAGCTAGCCGCCGTCAGCGCC
ATGGCCGGTGAAGGTGATCTTGTGCACGATGATGATGAGCAGCGTGCTGAAGAACAAGCTGATGGCGCACATGCTCAGGA
ACAGACTCGTGTTCATGGTCTTCATCCCTTTGGAGTTTGGATCCTCGCGGAGGAAGACGTTGAGGAGCATGTAGGAGAAA
CTGCGGCATCAGCAGGAGCACGGCGCTGTGCGACGACGATGATGTCAGGCGGTGCCACAACGGCCAAGCGGGTGATGGAG
AGAAAGAGGCCACAAACACGCTTGGAGCTGGGGCTTGCCAACGTCGTGGCTATGGCGGACGAGCGGAACACCAGCGGTGT
TTTCCCCTCGCTTGGTCTGCAACTGGACGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis