Browse Element(s) Details


OsAffx.7406.1.S1_at

Description tigr:9639.m04107
TID=OsAffx.7406.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4430010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44260OsAffx.31467.4.S1_at11/1111+26244095..26245558Protein kinase domain containing protein
LOC_Os11g44260OsAffx.31467.3.S1_s_at1/1111+26244095..26245558Protein kinase domain containing protein
LOC_Os11g44270OsAffx.31468.1.S1_at11/1111+26252601..26253000hypothetical protein
LOC_Os11g44280OsAffx.19365.1.S1_at11/1111+26255128..26255409hypothetical protein
LOC_Os11g44290NANA11+26260444..26260713expressed protein
LOC_Os11g44300OsAffx.7406.1.S1_at10/1111+26267439..26268268hypothetical protein
LOC_Os11g44310OsAffx.31470.1.S1_at11/1111+26272600..26277666expressed protein
LOC_Os11g44320NANA11+26277981..26278366hypothetical protein
LOC_Os11g44330Os.53792.1.S1_at11/1111+26283881..26286714expressed protein
LOC_Os11g44340OsAffx.19366.1.S1_at11/1111+26287630..26295603hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7406.1.S1_at--743--4211Chr11:26267895..26267919 (25 bp)
CCGCCAATGGCGTCCGCATCGAGGA
LOC_Os11g44300
OsAffx.7406.1.S1_at--54--2811Chr11:26267869..26267893 (25 bp)
AAGATCGACCGCCAGGCCGCGAACG
LOC_Os11g44300
OsAffx.7406.1.S1_at--787--2571Chr11:26267848..26267872 (25 bp)
AACGGCAGCCGCATCGAGAAGAAGC
LOC_Os11g44300
OsAffx.7406.1.S1_at--644--8471Chr11:26267801..26267825 (25 bp)
TGGCTCTCGCGATCAACCTAATCAA
LOC_Os11g44300
OsAffx.7406.1.S1_at--320--371Chr11:26267790..26267814 (25 bp)
ATCAACCTAATCAACGCCGCGCAAA
LOC_Os11g44300
OsAffx.7406.1.S1_at--938--5131NONE
GCAAACAACTCATCGCAGCGGGAGA
NONE
OsAffx.7406.1.S1_at--208--9611Chr11:26267654..26267675 (22 bp)
TCATCGCAGCGGGAGATCTTCAACA
LOC_Os11g44300
OsAffx.7406.1.S1_at--696--1631Chr11:26267647..26267671 (25 bp)
AGCGGGAGATCTTCAACACCGGCAA
LOC_Os11g44300
OsAffx.7406.1.S1_at--551--7651Chr11:26267644..26267668 (25 bp)
GGGAGATCTTCAACACCGGCAAGAA
LOC_Os11g44300
OsAffx.7406.1.S1_at--1136--1271Chr11:26267641..26267665 (25 bp)
AGATCTTCAACACCGGCAAGAACGG
LOC_Os11g44300
OsAffx.7406.1.S1_at--861--3271Chr11:26267613..26267637 (25 bp)
CAACAATGGTGGATGGAACAAGGGC
LOC_Os11g44300
Target Sequence 
CCGCCAATGGCGTCCGCATCGAGGAGAAGATCGACCGCCAGGCCGCGAACGGCAGCCGCATCGAGAAGAAGCTCGACAAG
CTCGCCGTCGCCGCTGGCTCTCGCGATCAACCTAATCAACGCCGCGCAAACAACTCATCGCAGCGGGAGATCTTCAACAC
CGGCAAGAACGGCAACAACAATGGTGGATGGAACAAGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis