Browse Element(s) Details


OsAffx.19366.1.S1_at

Description tigr:9639.m04111
TID=OsAffx.19366.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4434011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44300OsAffx.7406.1.S1_at10/1111+26267439..26268268hypothetical protein
LOC_Os11g44310OsAffx.31470.1.S1_at11/1111+26272600..26277666expressed protein
LOC_Os11g44320NANA11+26277981..26278366hypothetical protein
LOC_Os11g44330Os.53792.1.S1_at11/1111+26283881..26286714expressed protein
LOC_Os11g44340OsAffx.19366.1.S1_at11/1111+26287630..26295603hypothetical protein
LOC_Os11g44350OsAffx.19367.1.S1_at11/1111+26299209..26304621expressed protein
LOC_Os11g44360OsAffx.19368.1.S1_at11/1111+26309474..26309851hypothetical protein
LOC_Os11g44370OsAffx.19369.1.S1_at11/1111+26315734..26318946hypothetical protein
LOC_Os11g44370OsAffx.30891.1.S1_x_at1/1111+26315734..26318946hypothetical protein
LOC_Os11g44370Os.55580.1.S1_at1/1111+26315734..26318946hypothetical protein
LOC_Os11g44370OsAffx.28610.2.S1_x_at1/1111+26315734..26318946hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19366.1.S1_at--908--471Chr11:26292623..26292647 (25 bp)
ATCTGATTGGAATTCGTCGTTGGAC
LOC_Os11g44340
OsAffx.19366.1.S1_at--618--7211Chr11:26292638..26292662 (25 bp)
GTCGTTGGACTGGATTCATGGCCAC
LOC_Os11g44340
OsAffx.19366.1.S1_at--51--8071Chr11:26292955..26292979 (25 bp)
GGAGACATTCATTTTCACCTGCCAG
LOC_Os11g44340
OsAffx.19366.1.S1_at--12--6971Chr11:26293015..26293039 (25 bp)
GTAGCAGCTACGGTGAACAAGTCTT
LOC_Os11g44340
OsAffx.19366.1.S1_at--70--3391Chr11:26293055..26293079 (25 bp)
CAGCGACTGCTTATGGTTTACCCCA
LOC_Os11g44340
OsAffx.19366.1.S1_at--208--9171Chr11:26293081..26293105 (25 bp)
TGCCGCCTGTCTTGTTTTCAGACAA
LOC_Os11g44340
OsAffx.19366.1.S1_at--673--5531Chr11:26293198..26293222 (25 bp)
GAAACGGGTGATGCATGCCTTTATG
LOC_Os11g44340
OsAffx.19366.1.S1_at--1144--10331Chr11:26293217..26293241 (25 bp)
TTTATGCCGCCGTTTATTCAGAAGG
LOC_Os11g44340
OsAffx.19366.1.S1_at--459--111Chr11:26293232..26293256 (25 bp)
ATTCAGAAGGTACTCCCATCGGATT
LOC_Os11g44340
OsAffx.19366.1.S1_at--319--4331Chr11:26293247..26293271 (25 bp)
CCATCGGATTGCTTGTATTCAGTTC
LOC_Os11g44340
OsAffx.19366.1.S1_at--1115--2131Chr11:26293308..26293332 (25 bp)
ACAGACCATAGCTTTCAGTACATTT
LOC_Os11g44340
Target Sequence 
ATCTGATTGGAATTCGTCGTTGGACTGGATTCATGGCCACGCAGATGTGCAGTTGGAATCTATGCGGAGCAAAACTGGGG
TCATTCACCTGTCAGTGAAGCAGGCAGTTGGAGCCACAGGGGACTTCCTCCTTCACGGGCCGCAGGCAGTAGGAGACACA
GGAGACATTCATTTTCACCTGCCAGGGGAGCTGGCAGTAGAAGACACAGAGAAGCACGCAGTAGCAGCTACGGTGAACAA
GTCTTTGGAGAAGCCAGTAGCAGCGACTGCTTATGGTTTACCCCACTGCCGCCTGTCTTGTTTTCAGACAATATCAGCAA
TACAAGTAAATATTTCACGGATGAAGAATAATATACTTCACTCTTCTTAAAAATATATATATATATATATATACTTCACT
GATGAAACGGGTGATGCATGCCTTTATGCCGCCGTTTATTCAGAAGGTACTCCCATCGGATTGCTTGTATTCAGTTCAAC
TTTAGTGCATATTTGGATGTTATTAGTATATTTACAGACCATAGCTTTCAGTACATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis