Browse Element(s) Details


OsAffx.19368.1.S1_at

Description tigr:9639.m04113
TID=OsAffx.19368.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4436011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44330Os.53792.1.S1_at11/1111+26283881..26286714expressed protein
LOC_Os11g44340OsAffx.19366.1.S1_at11/1111+26287630..26295603hypothetical protein
LOC_Os11g44350OsAffx.19367.1.S1_at11/1111+26299209..26304621expressed protein
LOC_Os11g44360OsAffx.19368.1.S1_at11/1111+26309474..26309851hypothetical protein
LOC_Os11g44370OsAffx.19369.1.S1_at11/1111+26315734..26318946hypothetical protein
LOC_Os11g44370OsAffx.30891.1.S1_x_at1/1111+26315734..26318946hypothetical protein
LOC_Os11g44370Os.55580.1.S1_at1/1111+26315734..26318946hypothetical protein
LOC_Os11g44370OsAffx.28610.2.S1_x_at1/1111+26315734..26318946hypothetical protein
LOC_Os11g44380OsAffx.27508.7.S1_s_at11/1111+26324582..26325963expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19368.1.S1_at--623--3811Chr11:26309535..26309559 (25 bp)
CTCCTGCGCACGACATGGGCAGCAG
LOC_Os11g44360
OsAffx.19368.1.S1_at--851--1511Chr11:26309555..26309579 (25 bp)
AGCAGCTGTGCCGTTGGCACTGCAC
LOC_Os11g44360
OsAffx.19368.1.S1_at--144--3751Chr11:26309598..26309622 (25 bp)
CTCTTGTCTGCCCTAGAAATGGTAC
LOC_Os11g44360
OsAffx.19368.1.S1_at--1131--9471Chr11:26309604..26309628 (25 bp)
TCTGCCCTAGAAATGGTACCGCCGT
LOC_Os11g44360
OsAffx.19368.1.S1_at--404--3711Chr11:26309610..26309634 (25 bp)
CTAGAAATGGTACCGCCGTCCTCGC
LOC_Os11g44360
OsAffx.19368.1.S1_at--915--7251Chr11:26309627..26309651 (25 bp)
GTCCTCGCTGCTATCGCGGTGGCTG
LOC_Os11g44360
OsAffx.19368.1.S1_at--535--6491Chr11:26309690..26309714 (25 bp)
GATAGCCCGGCAAGGCCTGTAGCCT
LOC_Os11g44360
OsAffx.19368.1.S1_at--785--2951Chr11:26309701..26309725 (25 bp)
AAGGCCTGTAGCCTATCGCTGCCTG
LOC_Os11g44360
OsAffx.19368.1.S1_at--313--8751Chr11:26309707..26309731 (25 bp)
TGTAGCCTATCGCTGCCTGTCTCCT
LOC_Os11g44360
OsAffx.19368.1.S1_at--203--9231Chr11:26309747..26309771 (25 bp)
TCCACCATCCTTCGTATTCATGGAA
LOC_Os11g44360
OsAffx.19368.1.S1_at--130--3531Chr11:26309752..26309776 (25 bp)
CATCCTTCGTATTCATGGAAGAGGT
LOC_Os11g44360
Target Sequence 
CTCCTGCGCACGACATGGGCAGCAGCTGTGCCGTTGGCACTGCACCGCAGGCCATCATGGCCCCTCTTGTCTGCCCTAGA
AATGGTACCGCCGTCCTCGCTGCTATCGCGGTGGCTGCCGTGCTGCTTCGTGCTCTACGCCACCAACCCCACACCGATAG
CCCGGCAAGGCCTGTAGCCTATCGCTGCCTGTCTCCTCTGTCGCACCGCCTTTCCACCATCCTTCGTATTCATGGAAGAG
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis