Browse Element(s) Details


OsAffx.19367.1.S1_at

Description tigr:9639.m04112
TID=OsAffx.19367.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4435011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44310OsAffx.31470.1.S1_at11/1111+26272600..26277666expressed protein
LOC_Os11g44320NANA11+26277981..26278366hypothetical protein
LOC_Os11g44330Os.53792.1.S1_at11/1111+26283881..26286714expressed protein
LOC_Os11g44340OsAffx.19366.1.S1_at11/1111+26287630..26295603hypothetical protein
LOC_Os11g44350OsAffx.19367.1.S1_at11/1111+26299209..26304621expressed protein
LOC_Os11g44360OsAffx.19368.1.S1_at11/1111+26309474..26309851hypothetical protein
LOC_Os11g44370OsAffx.19369.1.S1_at11/1111+26315734..26318946hypothetical protein
LOC_Os11g44370OsAffx.30891.1.S1_x_at1/1111+26315734..26318946hypothetical protein
LOC_Os11g44370Os.55580.1.S1_at1/1111+26315734..26318946hypothetical protein
LOC_Os11g44370OsAffx.28610.2.S1_x_at1/1111+26315734..26318946hypothetical protein
LOC_Os11g44380OsAffx.27508.7.S1_s_at11/1111+26324582..26325963expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19367.1.S1_at--234--9452Chr11:26304119..26304143 (25 bp)
TCGGCACCAACTACAATTCCTTGAT
LOC_Os11g44350
OsAffx.19367.1.S1_at--796--8652Chr11:26304140..26304164 (25 bp)
TGATTTGGAAATCTTGGGCCCCTGC
LOC_Os11g44350
OsAffx.19367.1.S1_at--253--7573Chr11:26304155..26304179 (25 bp)
GGGCCCCTGCGAAATGCAAATTTTA
LOC_Os11g44350
OsAffx.19367.1.S1_at--568--8531Chr11:26304208..26304232 (25 bp)
TGGACATCTGACTGGCTAGCTGCAA
LOC_Os11g44350
OsAffx.19367.1.S1_at--171--5151Chr11:26304240..26304264 (25 bp)
GCAAAATAATGGTCTGTGCCCCTTA
LOC_Os11g44350
OsAffx.19367.1.S1_at--161--5451Chr11:26304276..26304300 (25 bp)
GAACGAGACGGCATGTCACCTGGTC
LOC_Os11g44350
OsAffx.19367.1.S1_at--388--1771Chr11:26304293..26304317 (25 bp)
ACCTGGTCGCCTTTTGTAGATACAC
LOC_Os11g44350
OsAffx.19367.1.S1_at--83--7711Chr11:26304347..26304371 (25 bp)
GGGTCGCCTATCAGCAATTGGATCC
LOC_Os11g44350
OsAffx.19367.1.S1_at--412--10851Chr11:26304364..26304388 (25 bp)
TTGGATCCGAACCATTGGGACCCAT
LOC_Os11g44350
OsAffx.19367.1.S1_at--1075--1271Chr11:26304454..26304478 (25 bp)
AGATCTTTAACCCTGCTCATTGTGT
LOC_Os11g44350
OsAffx.19367.1.S1_at--367--2572Chr11:26304528..26304552 (25 bp)
AACGGCTCCCAATCTTATGGCGAAA
LOC_Os11g44350
Target Sequence 
TCGGCACCAACTACAATTCCTTGATTTGGAAATCTTGGGCCCCTGCGAAATGCAAATTTTATTTGTGGCTTGTGATACAA
AACAAAGTTTGGACATCTGACTGGCTAGCTGCAAGAGGATGGCAAAATAATGGTCTGTGCCCCTTATGTCGGGAGACGAA
CGAGACGGCATGTCACCTGGTCGCCTTTTGTAGATACACCAGGAGGATTTGGAGATTAACGGCCAGCTGGGTCGCCTATC
AGCAATTGGATCCGAACCATTGGGACCCATGCCAAAGCATCCAAGAGTGGTGGGACATGCTAAACAACAAAAAGGAAGTG
CCTAAGAAAGGACTGAGATCTTTAACCCTGCTCATTGTGTGGGAAATCTGGAAGGAAAGGAATCAACGGATCTTTGAGCA
CAAGGAAACAACGGCTCCCAATCTTATGGCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis