Browse Element(s) Details


OsAffx.27508.7.S1_s_at

Description gb:AK110901.1
DB_XREF= gi:32996110
TID=OsAffx.27508.7
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-B02, full insert sequence.
FL= gb:AK110901.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4438011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44350OsAffx.19367.1.S1_at11/1111+26299209..26304621expressed protein
LOC_Os11g44360OsAffx.19368.1.S1_at11/1111+26309474..26309851hypothetical protein
LOC_Os11g44370OsAffx.19369.1.S1_at11/1111+26315734..26318946hypothetical protein
LOC_Os11g44370OsAffx.30891.1.S1_x_at1/1111+26315734..26318946hypothetical protein
LOC_Os11g44370Os.55580.1.S1_at1/1111+26315734..26318946hypothetical protein
LOC_Os11g44370OsAffx.28610.2.S1_x_at1/1111+26315734..26318946hypothetical protein
LOC_Os11g44380OsAffx.27508.7.S1_s_at11/1111+26324582..26325963expressed protein
LOC_Os11g44390Os.49232.1.S1_x_at8/1111+26337706..26344950retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g44390OsAffx.18435.1.S1_x_at1/1111+26337706..26344950retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g44400Os.47463.1.S1_x_at3/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400Os.2987.3.S1_x_at2/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400Os.14491.2.S1_x_at2/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400Os.27639.1.S1_x_at1/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400OsAffx.30255.1.S1_at1/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400Os.53731.1.S1_at1/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27508.7.S1_s_at--1155--2591Chr11:26324962..26324986 (25 bp)
AAGGGTACTGCATGATTCCCCGAAC
LOC_Os11g44380
OsAffx.27508.7.S1_s_at--34--731Chr11:26324951..26324975 (25 bp)
ATGATTCCCCGAACAGGTCAAGCTT
LOC_Os11g44380
OsAffx.27508.7.S1_s_at--574--7831Chr11:26324936..26324960 (25 bp)
GGTCAAGCTTTCATTTTATCGCATA
LOC_Os11g44380
OsAffx.27508.7.S1_s_at--731--10151Chr11:26324920..26324944 (25 bp)
TATCGCATATTTGGGTATCCGGAAA
LOC_Os11g44380
OsAffx.27508.7.S1_s_at--351--8571Chr11:26324863..26324887 (25 bp)
TGGATTTCCACATCATGCATTCGGG
LOC_Os11g44380
OsAffx.27508.7.S1_s_at--912--10851Chr11:26324772..26324796 (25 bp)
TTGGATATATATCCGCCCATTCCTA
LOC_Os11g44380
OsAffx.27508.7.S1_s_at--571--4171Chr11:26324757..26324781 (25 bp)
CCCATTCCTAGCTTCATCTTAATAA
LOC_Os11g44380
OsAffx.27508.7.S1_s_at--945--7471Chr11:26324706..26324730 (25 bp)
GTGTGTACTGTAATGCTGTGTTCTG
LOC_Os11g44380
OsAffx.27508.7.S1_s_at--806--7411Chr11:26324689..26324713 (25 bp)
GTGTTCTGCATGTCTGTGTAGTCGA
LOC_Os11g44380
OsAffx.27508.7.S1_s_at--937--6651Chr11:26324664..26324688 (25 bp)
GTTGAGTCCATCATGTTTGCTTCAT
LOC_Os11g44380
OsAffx.27508.7.S1_s_at--781--711Chr11:26324626..26324650 (25 bp)
ATGATCTTCAGACGCTCTGCATGAG
LOC_Os11g44380
Target Sequence 
AAGGGTACTGCATGATTCCCCGAACAGGTCAAGCTTTCATTTTATCGCATATTTGGGTATCCGGAAATCCATGGACTACG
TGATGATACACATAACACATGGATTTCCACATCATGCATTCGGGTTGCAACGGAATTGGGTTGGATATCATCTGAACTGC
ATTTAATTTCATGATCGGATTCAATTCAAATTGGATATATATCCGCCCATTCCTAGCTTCATCTTAATAATAAGCAGTTT
CAGTGTGATCGAGTCTGTGTGTACTGTAATGCTGTGTTCTGCATGTCTGTGTAGTCGAGTTGAGTCCATCATGTTTGCTT
CATTCTGTAATTCTGCATGATCTTCAGACGCTCTGCATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27508.7.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis