Browse Element(s) Details


OsAffx.7424.1.S1_at

Description tigr:9639.m04295
TID=OsAffx.7424.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4606011/11hypothetical protein
LOC_Os03g117904/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46020NANA11+27349580..27352132retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g46030OsAffx.10496.1.S1_at1/1111+27353868..27356775retrotransposon protein, putative, unclassified
LOC_Os11g46040OsAffx.1646.1.S1_x_at1/1111+27357739..27363219retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g46040OsAffx.22722.1.S1_x_at1/1111+27357739..27363219retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g46050NANA11+27363866..27364828hypothetical protein
LOC_Os11g46060OsAffx.7424.1.S1_at11/1111+27375667..27376113hypothetical protein
LOC_Os11g46070Os.52601.1.S1_at11/1111+27377785..27384128NB-ARC domain containing protein, expressed
LOC_Os11g46080Os.54361.1.S1_at11/1111+27387427..27394276NB-ARC domain containing protein, expressed
LOC_Os11g46080OsAffx.5663.1.S1_at1/1111+27387427..27394276NB-ARC domain containing protein, expressed
LOC_Os11g46090NANA11+27396108..27400052retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g46100OsAffx.19401.1.S1_at11/1111+27400653..27402236resistance protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7424.1.S1_at--61--8034Chr11:27375716..27375740 (25 bp)
GGAGGTATGGATTCCTTTGCTTCCA
LOC_Os11g46060
OsAffx.7424.1.S1_at--751--10671Chr11:27375727..27375751 (25 bp)
TTCCTTTGCTTCCAACCGCAGGCGT
LOC_Os11g46060
OsAffx.7424.1.S1_at--972--8751Chr11:27375733..27375757 (25 bp)
TGCTTCCAACCGCAGGCGTCTTCGA
LOC_Os11g46060
OsAffx.7424.1.S1_at--246--9252Chr11:27375780..27375804 (25 bp)
TCCTCGTCCTTCTCGATGCCGGTGG
LOC_Os11g46060
OsAffx.7424.1.S1_at--514--593Chr11:27375795..27375819 (25 bp)
ATGCCGGTGGCTCTTCTTCTTACCT
LOC_Os11g46060
OsAffx.7424.1.S1_at--837--3654Chr11:27375810..27375834 (25 bp)
CTTCTTACCTCTCCCCATTGATGTG
LOC_Os11g46060
OsAffx.7424.1.S1_at--310--6611Chr11:27375840..27375864 (25 bp)
GATTGGGAGGAGACATGGCGGCATT
LOC_Os11g46060
OsAffx.7424.1.S1_at--434--8071Chr11:27375971..27375995 (25 bp)
GGAGCACACAATCCGGCGCAGTGAC
LOC_Os11g46060
OsAffx.7424.1.S1_at--1036--2211Chr11:27375978..27376002 (25 bp)
ACAATCCGGCGCAGTGACCAGGGAA
LOC_Os11g46060
OsAffx.7424.1.S1_at--1080--8331Chr11:27376008..27376032 (25 bp)
GGCGGCCTCCCGAGATGGTGTAGCA
LOC_Os11g46060
OsAffx.7424.1.S1_at--57--2014Chr11:27376057..27376081 (25 bp)
ACTAGGGAGGTGGAAGGATCTTATT
LOC_Os11g46060
Target Sequence 
GGAGGTATGGATTCCTTTGCTTCCAACCGCAGGCGTCTTCGACCGGCCAGTCCCCGTACATCTATCCTCGTCCTTCTCGA
TGCCGGTGGCTCTTCTTCTTACCTCTCCCCATTGATGTGGTGGAGATTGGGAGGAGACATGGCGGCATTGGAGATGGGGG
GAGGACGATTCACATCAGCGGGGAGGATGGGAGCGGAGGAAGCGGTGATGGGATTGGGGAGGAGGAGGCGAGCCGAGTGG
CAGCAGCGGAAGCGCGGAGCACACAATCCGGCGCAGTGACCAGGGAAGGGGAGGCGGCCTCCCGAGATGGTGTAGCAGGG
GTGAAAATGAAAAATGGTAAGACTAGGGAGGTGGAAGGATCTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis