Browse Element(s) Details


OsAffx.7498.1.S1_at

Description tigr:9640.m00538
TID=OsAffx.7498.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F10A5.11
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0618011/11HVA22-like protein j, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06160NANA12+2910704..2911579uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os12g06170OsAffx.19518.1.S1_at10/1112+2919443..2921117hypothetical protein
LOC_Os12g06180OsAffx.7498.1.S1_at11/1112+2930759..2933408HVA22-like protein j, putative, expressed
LOC_Os12g06190OsAffx.31611.1.S1_s_at11/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.19151.1.S1_at1/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.6844.1.S1_x_at1/1112+2933608..2934619expressed protein
LOC_Os12g06200Os.424.1.S1_at11/1112+2938696..2944050Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os12g06210OsAffx.19519.1.S1_at11/1112+2946868..2947542Harpin-induced protein 1 containing protein
LOC_Os12g06220Os.5354.1.S1_at11/1112+2949703..2950593Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06230OsAffx.7499.1.S1_at11/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.12219.1.A1_at10/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.7578.1.S1_at5/1112+2952126..2965407hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7498.1.S1_at--153--10791Chr12:2931089..2931113 (25 bp)
TTGTATATGATACCTTCCTTCGGCC
LOC_Os12g06180
OsAffx.7498.1.S1_at--209--10651Chr12:2931103..2931127 (25 bp)
TTCCTTCGGCCCATTGTAATGCAAT
LOC_Os12g06180
OsAffx.7498.1.S1_at--694--6771Chr12:2931150..2931174 (25 bp)
GTTACTGCATCTGAGGGCGAAATCT
LOC_Os12g06180
OsAffx.7498.1.S1_at--504--6111Chr12:2931162..2931186 (25 bp)
GAGGGCGAAATCTGGGCAGCTACTT
LOC_Os12g06180
OsAffx.7498.1.S1_at--453--9471Chr12:2931172..2931196 (25 bp)
TCTGGGCAGCTACTTAGCTTCTACA
LOC_Os12g06180
OsAffx.7498.1.S1_at--82--731Chr12:2931248..2931272 (25 bp)
ATGTTGTCTCTGATAAACCTGAGGG
LOC_Os12g06180
OsAffx.7498.1.S1_at--709--2371Chr12:2931262..2931286 (25 bp)
AAACCTGAGGGATCCAATCAAGAGG
LOC_Os12g06180
OsAffx.7498.1.S1_at--325--6191Chr12:2932335..2932358 (24 bp)
GAGGACAGTGATGCTCAACCAGCTG
LOC_Os12g06180
OsAffx.7498.1.S1_at--248--3851Chr12:2932359..2932383 (25 bp)
CTGCAGCCTGCAGTGTTGTAGGGAA
LOC_Os12g06180
OsAffx.7498.1.S1_at--544--8151Chr12:2932784..2932808 (25 bp)
GGACAATTTCTACCTGATGACCCAC
LOC_Os12g06180
OsAffx.7498.1.S1_at--395--8871Chr12:2932798..2933231 (25 bp)
TGATGACCCACAACAGCGCAACAAG
LOC_Os12g06180
Target Sequence 
TTGTATATGATACCTTCCTTCGGCCCATTGTAATGCAATATGAACCAAACATAGAACAGAGGTTACTGCATCTGAGGGCG
AAATCTGGGCAGCTACTTAGCTTCTACATGAAGAACTTTGCCGACAAGGGGACAGCTTTCTTCATGGATGTCCTGCGCTA
TGTTGTCTCTGATAAACCTGAGGGATCCAATCAAGAGGACAGTGATGCTCAACCAGCTGCTGCAGCCTGCAGTGTTGTAG
GGAAGAAAAACCACCCCGCAGGAAACGTGGGGGGACAATTTCTACCTGATGACCCACAACAGCGCAACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis