Browse Element(s) Details


OsAffx.7548.1.S1_at

Description tigr:9640.m00965
TID=OsAffx.7548.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Major intrinsic protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1028011/11Major intrinsic protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10240OsAffx.31677.1.S1_x_at5/1112+5410785..5411208amino acid carrier, putative
LOC_Os12g10250OsAffx.31678.3.S1_x_at11/1112+5414947..5416660zinc finger family protein, putative, expressed
LOC_Os12g10260OsAffx.31678.1.S1_at11/1112+5420044..5422532hAT family dimerisation domain containing protein
LOC_Os12g10260OsAffx.31678.3.S1_x_at1/1112+5420044..5422532hAT family dimerisation domain containing protein
LOC_Os12g10270OsAffx.31678.2.S1_at11/1112+5431561..5433649hAT family dimerisation domain containing protein
LOC_Os12g10280OsAffx.7548.1.S1_at11/1112+5434714..5438021Major intrinsic protein, expressed
LOC_Os12g10290NANA12+5439409..5439792hypothetical protein
LOC_Os12g10300NANA12+5441629..5441876retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10310OsAffx.10633.1.S1_at3/1112+5442275..5446785retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10320Os.25559.1.S1_at11/1112+5454291..5455810uncharacterized plant-specific domain TIGR01627 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7548.1.S1_at--739--771Chr12:5435295..5435319 (25 bp)
ATGTCCACCCCTCGCGAAGAAGGCG
LOC_Os12g10280
OsAffx.7548.1.S1_at--372--9371Chr12:5435597..5435621 (25 bp)
TCGACGGGATCTTCCATCCGGCGAG
LOC_Os12g10280
OsAffx.7548.1.S1_at--892--9851Chr12:5437540..5437564 (25 bp)
TACAGCGATGATGAACGTTCTTGTC
LOC_Os12g10280
OsAffx.7548.1.S1_at--475--8971Chr12:5437551..5437575 (25 bp)
TGAACGTTCTTGTCGCAGGGTATGC
LOC_Os12g10280
OsAffx.7548.1.S1_at--630--6911Chr12:5437570..5437594 (25 bp)
GTATGCGTGTGAAATCCTATTGTGC
LOC_Os12g10280
OsAffx.7548.1.S1_at--1026--10311Chr12:5437596..5437618 (23 bp)
TTTACAACGTTCTTGTCGCAGGGCC
LOC_Os12g10280
OsAffx.7548.1.S1_at--512--5431Chr12:5437895..5437919 (25 bp)
GAACCCTGCAAGAACACTTGGTACA
LOC_Os12g10280
OsAffx.7548.1.S1_at--882--3611Chr12:5437911..5437935 (25 bp)
CTTGGTACAGCCATTGTCGCAGGGA
LOC_Os12g10280
OsAffx.7548.1.S1_at--591--7231Chr12:5437926..5437950 (25 bp)
GTCGCAGGGAATTACACCCAGATAT
LOC_Os12g10280
OsAffx.7548.1.S1_at--269--6491Chr12:5437946..5437970 (25 bp)
GATATGGGTCTACATGGTTTCTACC
LOC_Os12g10280
OsAffx.7548.1.S1_at--1072--6811Chr12:5437962..5437986 (25 bp)
GTTTCTACCCCTCTGGGTGCAATTG
LOC_Os12g10280
Target Sequence 
ATGTCCACCCCTCGCGAAGAAGGCGGCGGCCGAGTTCGTGGGCACGTTCATCCTGATCTTCGCCATGCTCTCCACCATCG
TGACCGACGCGCAGCGCGGCGGCGTGGAGGGCCTCGTCGGCGTGGCGGCGTCCATCGGGCTCGCCGTGGCGGTGCTCGTC
ATGTCGCTCGCCCACGTCTCCGGCGCCCACATCAACCCGGCGGTCAGCGTCGCCATGGCCGCGTTCGGGCGCCTCCAGCC
CGCGCACCTCCTGCCCTACGCCGCCGCGCAGGTCCTCGGCGCCGTCGCCGCCGCCGCCGCCGTCGACGGGATCTTCCATC
CGGCGAGCCGAGGGTGGATGGTTAAAGAGTTGATAGCAGTGGCAGTCGGTGGTACAGCGATGATGAACGTTCTTGTCGCA
GGGTATGCGTGTGAAATCCTATTGTGCATTTACAACGTTCTTGTCGCAGGGCCGTCGACAGGAGCATCAATGAACCCTGC
AAGAACACTTGGTACAGCCATTGTCGCAGGGAATTACACCCAGATATGGGTCTACATGGTTTCTACCCCTCTGGGTGCAA
TTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis