Browse Element(s) Details


OsAffx.7666.1.S1_at

Description tigr:9640.m02165
TID=OsAffx.7666.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2286010/11hypothetical protein
LOC_Os09g127501/11myb family transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22820NANA12+12882112..12883317retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g22830NANA12+12883810..12886366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g22850NANA12+12896882..12897298hypothetical protein
LOC_Os12g22860OsAffx.7666.1.S1_at10/1112+12903914..12904755hypothetical protein
LOC_Os12g22870OsAffx.31837.1.S1_at11/1112+12906507..12907162hypothetical protein
LOC_Os12g22870Os.54896.1.S1_at1/1112+12906507..12907162hypothetical protein
LOC_Os12g22880OsAffx.7667.1.S1_at10/1112+12908847..12910514hypothetical protein
LOC_Os12g22890NANA12+12927680..12928147transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g22900NANA12+12929702..12930187transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0010088biological_processphloem histogenesis
GO:0010089biological_processxylem histogenesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7666.1.S1_at--876--7691Chr12:12903998..12904022 (25 bp)
GGGTCAGCGCCAATGTACCTAGCGC
LOC_Os12g22860
OsAffx.7666.1.S1_at--143--751Chr12:12904010..12904034 (25 bp)
ATGTACCTAGCGCTGCTATGCATAA
LOC_Os12g22860
OsAffx.7666.1.S1_at--413--4871Chr12:12904024..12904047 (24 bp)
GCTATGCATAACTTCAGCGCCAATA
LOC_Os12g22860
OsAffx.7666.1.S1_at--700--2511NONE
AACTTCAGCGCCAATAACTTATTTT
NONE
OsAffx.7666.1.S1_at--161--10412Chr12:12904634..12904658 (25 bp)
TTATTCCAGGAATAGACCCTTTTGT
LOC_Os12g22860
OsAffx.7666.1.S1_at--117--8211Chr12:12904642..12904666 (25 bp)
GGAATAGACCCTTTTGTTGGCACTA
LOC_Os12g22860
OsAffx.7666.1.S1_at--507--1371Chr12:12904647..12904671 (25 bp)
AGACCCTTTTGTTGGCACTAGTGAC
LOC_Os12g22860
OsAffx.7666.1.S1_at--1120--10251Chr12:12904654..12904678 (25 bp)
TTTGTTGGCACTAGTGACCATGGCA
LOC_Os12g22860
OsAffx.7666.1.S1_at--383--8511Chr12:12904674..12904698 (25 bp)
TGGCACCGAGGTTCAATGTCTCGGC
LOC_Os12g22860
OsAffx.7666.1.S1_at--787--1011Chr12:12904682..12904706 (25 bp)
AGGTTCAATGTCTCGGCGTCAACGA
LOC_Os12g22860
OsAffx.7666.1.S1_at--1018--8351Chr12:12904696..12904720 (25 bp)
GGCGTCAACGACATAGGCACCGACA
LOC_Os12g22860
Target Sequence 
GGGTCAGCGCCAATGTACCTAGCGCTGCTATGCATAACTTCAGCGCCAATAACTTATTTTATAAATAGACCCTTTCAAAA
GTTTATTCCAGGAATAGACCCTTTTGTTGGCACTAGTGACCATGGCACCGAGGTTCAATGTCTCGGCGTCAACGACATAG
GCACCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis