Browse Element(s) Details


OsAffx.7667.1.S1_at

Description tigr:9640.m02167
TID=OsAffx.7667.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2288010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22830NANA12+12883810..12886366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g22850NANA12+12896882..12897298hypothetical protein
LOC_Os12g22860OsAffx.7666.1.S1_at10/1112+12903914..12904755hypothetical protein
LOC_Os12g22870OsAffx.31837.1.S1_at11/1112+12906507..12907162hypothetical protein
LOC_Os12g22870Os.54896.1.S1_at1/1112+12906507..12907162hypothetical protein
LOC_Os12g22880OsAffx.7667.1.S1_at10/1112+12908847..12910514hypothetical protein
LOC_Os12g22890NANA12+12927680..12928147transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g22900NANA12+12929702..12930187transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g22910NANA12+12931211..12933606transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7667.1.S1_at--936--1711Chr12:12908992..12909016 (25 bp)
ACCACCAGCAGTATGACGACGAAAA
LOC_Os12g22880
OsAffx.7667.1.S1_at--902--10071Chr12:12909003..12909027 (25 bp)
TATGACGACGAAAACCACCACCAGG
LOC_Os12g22880
OsAffx.7667.1.S1_at--833--8331Chr12:12909080..12909104 (25 bp)
GGCTGACGACGAGTGGTACGCGTAC
LOC_Os12g22880
OsAffx.7667.1.S1_at--415--3971Chr12:12909127..12909151 (25 bp)
CGTGCAGCGACGTGTGGTTCAGGTA
LOC_Os12g22880
OsAffx.7667.1.S1_at--541--9111Chr12:12909278..12909302 (25 bp)
TGCTGCGAGGGCGTACCATTCCGGC
LOC_Os12g22880
OsAffx.7667.1.S1_at--1078--4351Chr12:12909340..12909364 (25 bp)
CCACCTGCAGGGTCGTGAAGCGGCC
LOC_Os12g22880
OsAffx.7667.1.S1_at--209--8451NONE
GGCCAAGACGGAAAGGCTCTCAACT
NONE
OsAffx.7667.1.S1_at--709--5711Chr12:12910412..12910432 (21 bp)
GACGGAAAGGCTCTCAACTTGATGA
LOC_Os12g22880
OsAffx.7667.1.S1_at--996--2931Chr12:12910414..12910438 (25 bp)
AAGGCTCTCAACTTGATGAAGATGA
LOC_Os12g22880
OsAffx.7667.1.S1_at--684--8671Chr12:12910448..12910472 (25 bp)
TGTGTGTGTCTGTGCCTGCGTGACA
LOC_Os12g22880
OsAffx.7667.1.S1_at--460--7291Chr12:12910459..12910483 (25 bp)
GTGCCTGCGTGACAGCGATTTTACA
LOC_Os12g22880
Target Sequence 
ACCACCAGCAGTATGACGACGAAAACCACCACCAGGCGCCGCCGGAGGTGATGCGGTCGGCTCCCGCCGTCGCCGTGGCG
GCGGCGGCGGCTGACGACGAGTGGTACGCGTACGGCGGGGGCGCGGCGGCGGAGGCGTGCAGCGACGTGTGGTTCAGGTA
CTCGCCGCCGCCGCGGAGGCCGACGCCCAAGAAGGCGAGGAGGCCGGAGGGGAGGGTGGCTCCCGAGAAGGCGGCGCCGT
ACGACGACGGCGGCGGCAAGGGGAGGCAGCAGCAACAGGCGGCGCGTGCTGCGAGGGCGTACCATTCCGGCGGGGTGGCG
GTGGCGCGCACGCCGGCGAGGGGCGGCGCCACCTGCAGGGTCGTGAAGCGGCCGGTCGACGCCGACCTGTACCAGGTGCC
CCCGCCGGAGTTCGTCTCCCGCCGGCCAAGACGGAAAGGCTCTCAACTTGATGAAGATGAAGTGACAAGTGTGTGTGTCT
GTGCCTGCGTGACAGCGATTTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis